davidkartchner / biomedical-entity-linking
☆12Updated this week
Alternatives and similar repositories for biomedical-entity-linking:
Users that are interested in biomedical-entity-linking are comparing it to the libraries listed below
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆181Updated last year
- Biomedical Entity Linking Benchmark☆11Updated last month
- ☆64Updated 2 years ago
- ✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization☆24Updated last month
- Entity Linking & discovery solution. Agarwal et al., "Entity Linking via Explicit Mention-Mention Coreference Modeling", NAACL 2022.☆26Updated 9 months ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated 9 months ago
- ☆91Updated 5 years ago
- Weakly supervised medical named entity classification☆70Updated 2 years ago
- Fast, world class biomedical NER☆80Updated last month
- EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework☆10Updated 5 months ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- Bio relation extraction labeled dataset☆43Updated 2 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- ☆52Updated 4 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- Grounding of biomedical named entities with contextual disambiguation☆40Updated 3 months ago
- BERTMap: A BERT-Based Ontology Alignment System☆64Updated 9 months ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆19Updated 2 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆317Updated 3 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated last year
- A Serverless Text Annotation Tool for Corpus Development☆54Updated last month
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆161Updated last year
- ☆71Updated last year
- Conversion from brat-flavored standoff to CoNLL format☆50Updated 4 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆158Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 3 years ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆29Updated last year