chanzuckerberg / alhazenLinks
AI agents + toolkits for scientific knowledge
☆33Updated 2 months ago
Alternatives and similar repositories for alhazen
Users that are interested in alhazen are comparing it to the libraries listed below
Sorting:
- A Model Context Protocol (MCP) server enabling AI agents to intelligently search, retrieve, and analyze biomedical literature from PubMed…☆34Updated last month
- The light frontend for BioChatter, in pure Python☆54Updated 4 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆95Updated 5 months ago
- A data framework for biology. Makes your data queryable, traceable, reproducible, and FAIR. One API: lakehouse, lineage, feature store, o…☆207Updated this week
- ☆12Updated last year
- The advanced implementation for BioChatter, using Next.js☆15Updated 10 months ago
- a python bioinformatics framework☆169Updated this week
- All code necessary for reconstructing Bonsai-trees on high-dimensional data and visualizing them in Bonsai-scout☆83Updated last week
- Benchmark for LLM-based Agents in Computational Biology☆62Updated last month
- LLMs for microplate data☆43Updated last year
- Backend library for conversational AI in biomedicine☆191Updated 2 weeks ago
- A declarative interactive genomics visualization library for Python.☆229Updated last month
- LLM agents for working with the SRA and associated bioinformatics databases.☆135Updated last week
- A unifying framework for biomedical research knowledge graphs☆278Updated this week
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆42Updated last week
- Automated machine learning for analyzing, interpreting, and designing biological sequences☆172Updated 2 years ago
- A LLM powered agent for bioinformatics 🤖☆56Updated 6 months ago
- Python library for calling Cytoscape Automation via CyREST☆84Updated 3 months ago
- Oxbow makes genomic data ready for high-performance analytics.☆144Updated this week
- Experimental Marimo extension for Agentic Notebooks -- integrating AI Agents into the Notebook workflow☆11Updated last month
- A language agent gym with challenging scientific tasks☆212Updated 2 weeks ago
- Command line scientific data management tool☆228Updated last year
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆190Updated 8 months ago
- ☆14Updated 7 months ago
- QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources☆45Updated last week
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆79Updated 2 years ago
- In silico protein surgery using ESM.☆18Updated last year
- Chat with Open Targets genetics database leveraging text-to-graphQL capabilities of OpenAI Codex.☆102Updated 6 months ago
- ☆57Updated 2 months ago
- BioMCP: Biomedical Model Context Protocol☆353Updated last week