ccsb-scripps / MycoplasmaGenitaliumView external linksLinks
Modelling of Mycoplasma genitalium
☆61Jun 2, 2022Updated 3 years ago
Alternatives and similar repositories for MycoplasmaGenitalium
Users that are interested in MycoplasmaGenitalium are comparing it to the libraries listed below
Sorting:
- This module includes functions that can be used to simulate mechanochemical phenomena.☆11Nov 16, 2021Updated 4 years ago
- Fragment Graphical Variational AutoEncoding for Screening and Generating Molecules☆14Nov 21, 2022Updated 3 years ago
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- Energy-guided binder design pipeline built on BindCraft☆16Jun 6, 2025Updated 8 months ago
- Clustering tool for biomolecular structural ensembles and data in general.☆10Aug 24, 2020Updated 5 years ago
- These are the famous Uppsala Software Factory programs, rescued into GitHub.☆10Nov 3, 2022Updated 3 years ago
- ELViM is a method for visualizing the energy landscapes of biomolecules simulations.☆12Aug 18, 2025Updated 5 months ago
- ☆14Mar 4, 2019Updated 6 years ago
- Demos of many Rosetta applications☆22Jun 10, 2025Updated 8 months ago
- A toolkit for painting agent-based mesoscale molecular simulations and illustrations.☆55May 7, 2020Updated 5 years ago
- A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.☆14Oct 21, 2025Updated 3 months ago
- ☆18Jul 29, 2025Updated 6 months ago
- A lesson exploring the Julia language☆17Feb 10, 2026Updated last week
- Metrics to evaluate distributional coverage of generative models of protein structures.☆19Aug 13, 2025Updated 6 months ago
- Protein Structure Archiver☆13Sep 10, 2025Updated 5 months ago
- A Python package for mapping sequence aligned data onto protein structures☆37May 26, 2021Updated 4 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- Self-supervised deep learning framework for CryoET analysis☆20Jan 28, 2026Updated 2 weeks ago
- ☆15Jun 22, 2020Updated 5 years ago
- a protein descriptor for site prediction☆16Aug 9, 2019Updated 6 years ago
- High-performance stochastic modeling of DNA loop extrusion interactions☆18Dec 22, 2025Updated last month
- Rapid Generation of Rare Event Pathways Using Direction Guided Adaptive Sampling: From Ligand Unbinding to Protein (Un)Folding☆38Nov 25, 2025Updated 2 months ago
- ☆27Aug 8, 2025Updated 6 months ago
- ☆15Sep 1, 2023Updated 2 years ago
- PCA and normal mode analysis of proteins☆20May 16, 2024Updated last year
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.☆192Updated this week
- Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)☆106Dec 7, 2023Updated 2 years ago
- Repo for the publication titled: "Key Interaction Networks: Identifying Evolutionarily Conserved Non-Covalent Interaction Networks Across…☆18Nov 14, 2023Updated 2 years ago
- ☆21Dec 3, 2024Updated last year
- Reliable estimation of membrane curvature for cryo-electron tomography☆21Jul 10, 2025Updated 7 months ago
- ☆47Jan 28, 2026Updated 2 weeks ago
- protein conformational spaces meet machine learning☆50Dec 16, 2025Updated 2 months ago
- The pure C++ implementation of the MMTF API, decoder and encoder.☆21Nov 14, 2023Updated 2 years ago
- Deep learning model to predict degron sequences☆19Feb 24, 2023Updated 2 years ago
- development repository for PyInteraph2☆22Mar 26, 2025Updated 10 months ago
- ☆19Jun 10, 2024Updated last year
- ☆22Nov 26, 2025Updated 2 months ago
- A model-context-protocol server for molecules.☆88Apr 20, 2025Updated 9 months ago