joaander / hoomd-examples
☆15Updated last year
Related projects ⓘ
Alternatives and complementary repositories for hoomd-examples
- A set of tutorials to introduce new users to the MoSDeF (Molecular Simulation Design Framework) toolkit☆25Updated 7 months ago
- HOOMD-blue example scripts.☆35Updated 3 weeks ago
- Molecular dynamics and Monte Carlo simulation package for polymeric and molecular liquids☆31Updated 2 years ago
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆76Updated 2 months ago
- N-Dimensional MD engine with symmetry group constraints written in C☆43Updated 3 months ago
- a python package for the interfacial analysis of molecular simulations☆79Updated 2 weeks ago
- Introductory tutorial on TPS, committor analysis, and (MS)TIS with OpenPathSampling☆14Updated 10 months ago
- Mirror of https://github.com/lukasturcani/stk - please file issues / fork / star that repo.☆21Updated 2 years ago
- Implementing OPLS-AA/M Force field in OpenMM from CHARMM formatted parameter files☆11Updated 9 years ago
- Python code for learning Molecular Dynamics simulations☆52Updated 3 years ago
- Physical validation of molecular simulations☆55Updated last week
- ☆57Updated this week
- A HOOMD-blue component for soft matter simulations.☆21Updated last week
- Analyse Rotational Diffusion Tensor from MD Simulations☆16Updated 3 weeks ago
- JAX-ReaxFF: A Gradient Based Framework for Extremely Fast Optimization of Reactive Force Fields☆58Updated last month
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆60Updated last year
- Flexible storage of chemical topology for molecular simulation☆52Updated this week
- A Python toolkit for the analyis of lipid membrane simulations☆29Updated 5 months ago
- Get access to our MD data files.☆25Updated last year
- Suite of programs to perform non-linear dimensionality reduction -- sketch-map in particular☆46Updated last month
- AutoTST: A framework to perform automated transition state theory calculations☆33Updated 3 months ago
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆19Updated 6 years ago
- MDAnalysis wrapper around Packmol☆28Updated last year
- polygon (ring network) discovery from XYZ files☆10Updated 8 years ago
- Coarse-grained molecular model of DNA (LAMMPS plugin)☆16Updated 2 years ago
- Accelerated sampling framework with autoencoder-based method☆24Updated 5 years ago
- Enhanced sampling methods for molecular dynamics simulations☆36Updated last year
- Playmol is a(nother) software for building molecular models☆17Updated last year
- A framework for conducting polymer reference interaction site model (PRISM) calculations☆39Updated 3 years ago