Alternatives and similar repositories for snakemake_fa23

Users that are interested in snakemake_fa23 are comparing it to the libraries listed below

• nt246 / lcwgs-guide-tutorial
  ☆90Updated 4 years ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆134Updated this week
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 8 months ago
• NGSchoolEU / ngs22
  Repository with NGSchool2022 materials
  ☆14Updated 3 years ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆116Updated 11 months ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated last month
• lh3 / psmc
  Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
  ☆174Updated 2 weeks ago
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆167Updated last year
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated last year
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆92Updated last year
• Pas-Kapli / phylophysalia2023
  ☆10Updated 10 months ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated 2 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆63Updated 11 months ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆66Updated last year
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆59Updated 2 weeks ago
• GenomicsCoreLeuven / GBSX
  GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments
  ☆18Updated 9 years ago
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆106Updated last year
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆128Updated 3 months ago
• bpucker / teaching
  This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
  ☆52Updated last week
• BGI-shenzhen / PopLDdecay
  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
  ☆199Updated last year
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆62Updated 9 months ago
• isaacovercast / easySFS
  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …
  ☆157Updated last year
• steuernb / AgRenSeq
  ☆13Updated 3 years ago
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆98Updated 3 years ago
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆91Updated last year
• ramachandran-lab / pong
  Fast analysis and visualization of latent clusters in population genetic data
  ☆77Updated 3 years ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆65Updated 2 years ago
• Capblancq / RDA-landscape-genomics
  ☆30Updated 3 years ago