Data Ingestion and Harmonization
☆46Mar 17, 2026Updated 2 months ago
Alternatives and similar repositories for Data-Ingestion-and-Harmonization
Users that are interested in Data-Ingestion-and-Harmonization are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Web app and CLI tools for working with biomedical terminologies.☆11Mar 20, 2026Updated 2 months ago
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆66Jul 10, 2025Updated 10 months ago
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Dec 8, 2022Updated 3 years ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆16Sep 28, 2020Updated 5 years ago
- A python library for calculating semantic similarity between patients in N3C☆14Oct 5, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆96Oct 3, 2023Updated 2 years ago
- ☆18Apr 22, 2026Updated last month
- ☆25Feb 3, 2025Updated last year
- CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH)☆18Jan 7, 2022Updated 4 years ago
- Network Embedding All the Things☆19Oct 4, 2022Updated 3 years ago
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆34Jan 16, 2024Updated 2 years ago
- Jupyter Notebooks and other code for 4CE data visualizations.☆13Jan 25, 2023Updated 3 years ago
- R package to easily interface with OMOP-formatted EHR data.☆38Mar 4, 2020Updated 6 years ago
- This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.☆87Mar 25, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆14Apr 14, 2026Updated last month
- ☆12Nov 14, 2025Updated 6 months ago
- loinc2hpo Annotation Data☆26Aug 4, 2022Updated 3 years ago
- This repo hosts the API metadata for the Translator project☆15Jun 2, 2026Updated last week
- ☆10Apr 23, 2025Updated last year
- Transform the OMOP model to graph model☆27Dec 13, 2024Updated last year
- Open source clinical text de-identification☆157Aug 20, 2024Updated last year
- Computational LOINC in OWL.☆18Oct 8, 2025Updated 8 months ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆37Jan 2, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This project looks at creating a controlled vocabulary for DICOM Pt 6 Data Dictionary with a focus on CS code strings.☆12Jan 9, 2026Updated 5 months ago
- Runs CQL phenotype definitions against an OMOP repository☆12Apr 14, 2023Updated 3 years ago
- Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion☆10Oct 20, 2020Updated 5 years ago
- Supporting multi-center research requires combining data created in different data models; this community coordination project aims to pr…☆18Mar 27, 2020Updated 6 years ago
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆14Jun 21, 2023Updated 2 years ago
- Clinical Language Annotation Modeling and Processing toolkit☆17Oct 10, 2016Updated 9 years ago
- The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)☆27Apr 16, 2021Updated 5 years ago
- ☆20May 4, 2026Updated last month
- Collaborative NLP annotation tool supporting enterprise authentication, inter-annotator statistics, active learning☆13Mar 5, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆91Apr 24, 2026Updated last month
- KGX is a Python library for exchanging Knowledge Graphs☆140Updated this week
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Mar 13, 2023Updated 3 years ago
- ARCH i2b2 PCORnet Ontology☆14May 1, 2019Updated 7 years ago
- ☆22Sep 19, 2024Updated last year
- A web-based version of the codebook, which generates a concise summary of every variable in a dataset.☆14Apr 9, 2022Updated 4 years ago
- A tool to help improve data quality standards in observational data science.☆178May 18, 2026Updated 3 weeks ago