Data Ingestion and Harmonization
☆47Mar 17, 2026Updated 6 months ago
Alternatives and similar repositories for Data-Ingestion-and-Harmonization
Users that are interested in Data-Ingestion-and-Harmonization are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Web app and CLI tools for working with biomedical terminologies.☆11Mar 20, 2026Updated 6 months ago
- ☆17Jun 12, 2026Updated 3 months ago
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Dec 8, 2022Updated 3 years ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆18Sep 28, 2020Updated 6 years ago
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆66Jul 10, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A python library for calculating semantic similarity between patients in N3C☆14Oct 5, 2022Updated 4 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆100Oct 3, 2023Updated 3 years ago
- Pilot model and converter for integration of radiology data into OMOP-CDM☆24Nov 1, 2019Updated 6 years ago
- Clinical Research Informatics☆13Sep 2, 2026Updated last month
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆43Nov 10, 2023Updated 2 years ago
- ☆26Feb 3, 2025Updated last year
- Network Embedding All the Things☆19Oct 4, 2022Updated 4 years ago
- CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH)☆18Jan 7, 2022Updated 4 years ago
- The OpenAPI Specification Repository☆12Jul 12, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆35Jan 16, 2024Updated 2 years ago
- Disease Mechanisms KB☆65Updated this week
- OMOP v53 on FHIR R4☆17Sep 21, 2023Updated 3 years ago
- Jupyter Notebooks and other code for 4CE data visualizations.☆14Jan 25, 2023Updated 3 years ago
- This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.☆89Sep 18, 2026Updated 3 weeks ago
- ☆14Apr 14, 2026Updated 5 months ago
- R package to easily interface with OMOP-formatted EHR data.☆39Mar 4, 2020Updated 6 years ago
- ☆10Apr 23, 2025Updated last year
- loinc2hpo Annotation Data☆26Aug 4, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Nov 14, 2025Updated 10 months ago
- This repo hosts the API metadata for the Translator project☆15Sep 2, 2026Updated last month
- A tool to help improve data quality standards in observational data science.☆188Updated this week
- Clinical Language Annotation Modeling and Processing toolkit☆17Oct 10, 2016Updated 10 years ago
- Medication Extraction and Reconciliation Knowledge Instrument☆13Jun 17, 2026Updated 3 months ago
- Open source clinical text de-identification☆161Aug 20, 2024Updated 2 years ago
- Computational LOINC in OWL.☆19Jul 1, 2026Updated 3 months ago
- A Node.js framework for extracting mCODE FHIR resources☆23Dec 12, 2023Updated 2 years ago
- Runs CQL phenotype definitions against an OMOP repository☆12Apr 14, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This project looks at creating a controlled vocabulary for DICOM Pt 6 Data Dictionary with a focus on CS code strings.☆16Jan 9, 2026Updated 9 months ago
- Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion☆10Oct 20, 2020Updated 5 years ago
- Downloads and prepares public PDAC data for analysis, and provides some basic tools for this analysis.☆15Dec 2, 2025Updated 10 months ago
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆14Jun 21, 2023Updated 3 years ago
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated last year
- ☆29Jul 15, 2023Updated 3 years ago
- The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)☆27Apr 16, 2021Updated 5 years ago