National-Clinical-Cohort-Collaborative / Data-Ingestion-and-Harmonization
Data Ingestion and Harmonization
☆43Updated 2 years ago
Alternatives and similar repositories for Data-Ingestion-and-Harmonization:
Users that are interested in Data-Ingestion-and-Harmonization are comparing it to the libraries listed below
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆87Updated last year
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated 5 months ago
- ☆25Updated 2 months ago
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆62Updated last year
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆36Updated last year
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆60Updated last month
- Training materials for Vocabulary & CDM Tutorial.☆21Updated 5 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- ☆27Updated 6 years ago
- A python library for calculating semantic similarity between patients in N3C☆13Updated 2 years ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆107Updated 2 months ago
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Updated 2 years ago
- Clinical Research Informatics☆13Updated last year
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆14Updated 4 years ago
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆31Updated last year
- Web app and CLI tools for working with biomedical terminologies. https://github.com/orgs/jhu-bids/projects/9/views/7☆11Updated this week
- Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.☆95Updated 10 months ago
- Course materials for OHDSI ETL tutorial☆45Updated 6 months ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 3 years ago
- This project looks at creating a controlled vocabulary for DICOM Pt 6 Data Dictionary with a focus on CS code strings.☆11Updated 3 months ago
- Oncology Working Group Repository☆56Updated 2 weeks ago
- Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.☆80Updated last week
- ETL-CDMBuilder is a repo containing a .NET Core application to perform ETL to OMOP CDM for multiple databases☆52Updated 2 years ago
- Leaf Clinical Data Explorer☆91Updated 3 weeks ago
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆44Updated 3 weeks ago
- The PCORnet Common Data Model (CDM) Forum guidance repository contains materials intended to support implementation efforts by data partn…☆30Updated 4 years ago
- Transform the OMOP model to graph model☆22Updated 4 months ago
- This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.☆32Updated 3 years ago
- PCORnet Ontology to OMOP - beta!☆11Updated last year
- loinc2hpo Annotation Data☆24Updated 2 years ago