National-Clinical-Cohort-Collaborative / Data-Ingestion-and-HarmonizationLinks
Data Ingestion and Harmonization
☆46Updated 3 months ago
Alternatives and similar repositories for Data-Ingestion-and-Harmonization
Users that are interested in Data-Ingestion-and-Harmonization are comparing it to the libraries listed below
Sorting:
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆93Updated 2 years ago
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated 4 months ago
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆64Updated 5 months ago
- ☆25Updated 10 months ago
- Oncology Working Group Repository☆58Updated 3 months ago
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆33Updated last year
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆38Updated 2 years ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆72Updated 4 months ago
- ☆14Updated 3 months ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆119Updated 10 months ago
- Leaf Clinical Data Explorer☆97Updated last month
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆34Updated last year
- Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.☆104Updated last year
- Course materials for OHDSI ETL tutorial☆53Updated 2 months ago
- FHIR to pandas dataframe for data analytics, AI and ML!☆44Updated last week
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆15Updated 5 years ago
- A python library for calculating semantic similarity between patients in N3C☆13Updated 3 years ago
- Transform the OMOP model to graph model☆27Updated last year
- Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a…☆143Updated 3 weeks ago
- Training materials for Vocabulary & CDM Tutorial.☆22Updated 6 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆87Updated last month
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆14Updated last year
- Clinical Research Informatics☆13Updated 2 years ago
- Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.☆87Updated last week
- loinc2hpo Annotation Data☆26Updated 3 years ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆61Updated 3 years ago
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆49Updated 2 months ago
- PCORnet Ontology to OMOP - beta!☆11Updated last year
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 4 years ago
- Medical action ontology☆60Updated 3 months ago