National-Clinical-Cohort-Collaborative / Data-Ingestion-and-HarmonizationLinks
Data Ingestion and Harmonization
☆45Updated 2 months ago
Alternatives and similar repositories for Data-Ingestion-and-Harmonization
Users that are interested in Data-Ingestion-and-Harmonization are comparing it to the libraries listed below
Sorting:
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆89Updated last year
- ☆25Updated 5 months ago
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆65Updated last week
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆28Updated 8 months ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆37Updated last year
- Java library to map LOINC-encoded test results to Human Phenotype Ontology☆31Updated last year
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆14Updated 4 years ago
- Training materials for Vocabulary & CDM Tutorial.☆21Updated 5 years ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆63Updated 4 months ago
- loinc2hpo Annotation Data☆24Updated 2 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- Oncology Working Group Repository☆57Updated 2 weeks ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Updated 4 years ago
- Leaf Clinical Data Explorer☆91Updated 3 months ago
- Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.☆98Updated last year
- A python library for calculating semantic similarity between patients in N3C☆13Updated 2 years ago
- Computational LOINC in OWL.☆14Updated this week
- ☆27Updated 7 years ago
- ☆13Updated 5 months ago
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆47Updated 3 months ago
- Medical action ontology☆59Updated last month
- A package supporting the conversion from Synthea CSV to OMOP CDM☆113Updated 4 months ago
- Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.☆82Updated 3 months ago
- An R package for performing various cohort diagnostics.☆46Updated last month
- Workproducts to ETL CMS datasets into OMOP Common Data Model☆100Updated 3 years ago
- ☆10Updated 2 weeks ago
- Web app and CLI tools for working with biomedical terminologies. https://github.com/orgs/jhu-bids/projects/9/views/7☆12Updated this week
- ETL-CDMBuilder is a repo containing a .NET Core application to perform ETL to OMOP CDM for multiple databases☆53Updated this week
- ☆14Updated 4 months ago
- An R package for evaluating phenotype algorithms.☆18Updated 9 months ago