Alternatives and similar repositories for orange-bio

Users that are interested in orange-bio are comparing it to the libraries listed below

• davisidarta / dbMAP
  A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions…
  ☆48Updated 4 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated last year
• rnabioco / practical-data-analysis
  Short course using RStudio for biological data analysis
  ☆14Updated 3 years ago
• NCBI-Hackathons / PubRunner
  Framework for running text mining tools on latest publications. Main page at:
  ☆14Updated 3 years ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆17Updated 2 years ago
• DataBiosphere / data-browser
  ☆11Updated last week
• broadinstitute / gene-hints
  Discoverability for gene search
  ☆12Updated 2 years ago
• cytoscape / cytoscape-manual
  Markdown version of Cytoscape manual
  ☆11Updated 7 months ago
• kbroman / qtl2
  QTL analysis software for high-dimensional data and complex cross designs
  ☆10Updated last month
• ialbert / pyblue-central
  Static website generator for sciencey people
  ☆30Updated last year
• bioinformatics-core-shared-training / Managing-your-research-data
  Course on good principles & practices in Data Management (https://tinyurl.com/cruk-myrd)
  ☆18Updated 2 years ago
• biolab / ipynb
  Biolab's IPython's notebooks.
  ☆16Updated last year
• krassowski / nbpipeline
  Snakemake-like pipeline manager for reproducible Jupyter Notebooks
  ☆17Updated 3 years ago
• scikit-bio / scikit-bio-cookbook
  Recipes for bioinformatics analyses with scikit-bio
  ☆42Updated 9 years ago
• biolab / orange3-imageanalytics
  🍊 Orange3 add-on for dealing with image related tasks
  ☆33Updated 4 months ago
• DataBiosphere / data-explorer
  ☆11Updated 2 years ago
• ucberkeley / bce
  Berkeley Common Environment provides a common Linux computational environment for classwork and research.
  ☆13Updated 6 years ago
• lgautier / mashing-pumpkins
  Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.
  ☆22Updated 7 months ago
• auerbachs / BMDExpress-2
  Software for analyzing high dimensional dose-response data
  ☆19Updated 11 months ago
• molpopgen / BigDataFormats
  Tutorial on programming or "big data"/bioinformatics
  ☆32Updated 7 years ago
• idekerlab / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆17Updated 2 years ago
• datacarpentry / organization-genomics
  Project Organization and Management for Genomics
  ☆25Updated this week
• gagolews / genieclust
  Genie: Fast and Robust Hierarchical Clustering with Noise Point Detection - in Python and R
  ☆63Updated this week
• NCBI-Hackathons / PrecisionMedicineToolkit
  Search public databases for given genotypic information
  ☆11Updated 7 years ago
• hms-dbmi / upset-altair-notebook
  Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots
  ☆31Updated 3 years ago
• icgc-dcc / dcc-portal
  Data portal for exploring and accessing data
  ☆15Updated last year
• jdrudolph / uniprot
  command-line and python interface to the uniprot database
  ☆10Updated 10 years ago
• biolab / orange3-single-cell
  🍊🔬 Orange add-on for gene expression of single cell data
  ☆17Updated 2 months ago
• MaayanLab / appyter
  jinja2-enabled jupyter notebooks
  ☆37Updated 2 weeks ago
• Caleydo / ordino
  Target discovery platform for exploring rankings of genes, disease models, and other entities. @JKU-ICG @datavisyn
  ☆12Updated last year