Neuro Lesion Inpainting Tool (neuroLIT / FastSurfer-LIT) for lesion inpainting e.g. for whole brain segmentation and cortical surface reconstruction in the presence of tumor, surgical cavities or other abnormalities
☆22Aug 11, 2026Updated this week
Alternatives and similar repositories for neurolit
Users that are interested in neurolit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Aug 16, 2024Updated last year
- Subdivides the surface-based Desikan-Killiany atlas into equally sized regions. Please cite: Romero-Garcia R, Atienza M, Clemmensen LH, C…☆22Oct 28, 2025Updated 9 months ago
- CNN-based segmentation tool for segmenting PVS on T1 and WMH on FLAIR MRI☆13Mar 28, 2025Updated last year
- Learning joint Segmentation of Tissues And Brain Lesions (jSTABL) from task-specific hetero-modal domain-shifted datasets☆13Mar 24, 2025Updated last year
- A workflow to allow Freesurfer recon-all to run on brain image with gliomas☆32Aug 2, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- LGI: Cortical Shape-Adaptive Local Gyrification Index☆12Oct 13, 2020Updated 5 years ago
- Adding quality checks and confounds computation steps to fmriprep for stroke data.☆15Apr 14, 2026Updated 3 months ago
- Automated plotting of neuroimaging maps from Python using Connectome Workbench.☆16Apr 3, 2024Updated 2 years ago
- Robust Brain Extraction Tool for CT Head Images☆51Oct 7, 2020Updated 5 years ago
- Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries☆44Jul 21, 2022Updated 4 years ago
- Matlab for NIFTI support☆10Dec 26, 2018Updated 7 years ago
- ☆22Feb 23, 2026Updated 5 months ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline Version 2☆33Aug 4, 2026Updated last week
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆39Mar 21, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆124Jul 13, 2026Updated last month
- SPM Cluster Size Threshold estimation☆13Feb 6, 2023Updated 3 years ago
- C implementation of Brain Extraction based on nonlocal Segmentation Technique☆16Jul 5, 2026Updated last month
- Network Modification Tool☆20Jul 23, 2026Updated 3 weeks ago
- codes for paper accepted in IPMI2025 titled: ''MAD-AD: Masked Diffusion Autoencoder for Unsupervised Brain Anomaly Detection"☆17Aug 26, 2025Updated 11 months ago
- MALPEM whole-brain segmentation framework☆27Feb 7, 2024Updated 2 years ago
- Please visit our new location: https://github.com/tractometry/pyAFQ☆60Oct 10, 2024Updated last year
- ☆47Jun 5, 2026Updated 2 months ago
- ☆26Dec 1, 2025Updated 8 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution☆27Apr 26, 2022Updated 4 years ago
- Data and code supporting Hansen et al., 2022, Nature Communications, "Local molecular and global connectomic contributions to cross-disor…☆25Sep 22, 2022Updated 3 years ago
- PyTorch implementation of FastSurferCNN☆626Updated this week
- AssemblyNet: 3D Whole Brain MRI segmentation pipeline☆73Jun 28, 2023Updated 3 years ago
- Displays regional stats on Freesurfer surfaces in MATLAB☆16Sep 18, 2020Updated 5 years ago
- An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images☆53Feb 11, 2026Updated 6 months ago
- R package to implement template ICA☆11May 20, 2025Updated last year
- ☆17Jul 30, 2026Updated 2 weeks ago
- A package for publication-ready brain surface figures☆76Nov 18, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The dHCP deep learning-based neonatal structural MRI processing pipeline.☆23Oct 17, 2024Updated last year
- A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data☆82Jul 31, 2026Updated last week
- niimath - a clone of fslmaths. Try the live demo:☆86Aug 2, 2026Updated last week
- This is the implementation of k-space cold diffusion model for accelerated MRI reconstruction.☆24Oct 12, 2024Updated last year
- A few routines to perform "auto reorient" in SPM☆17Jan 11, 2023Updated 3 years ago
- REACT: Receptor-Enriched Analysis of functional Connectivity by Targets☆26Aug 23, 2023Updated 2 years ago
- A Tractography Tool for Diffusion MRI☆161Updated this week