Neuro Lesion Inpainting Tool (neuroLIT / FastSurfer-LIT) for lesion inpainting e.g. for whole brain segmentation and cortical surface reconstruction in the presence of tumor, surgical cavities or other abnormalities
☆24Oct 19, 2026Updated 2 weeks ago
Alternatives and similar repositories for neurolit
Users that are interested in neurolit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and weights for "Synthetic Data for Robust Stroke Segmentation"☆14Nov 27, 2025Updated 11 months ago
- ☆17Aug 16, 2024Updated 2 years ago
- A workflow to allow Freesurfer recon-all to run on brain image with gliomas☆33Oct 10, 2026Updated 3 weeks ago
- ☆17Oct 8, 2026Updated 3 weeks ago
- CNN-based segmentation tool for segmenting PVS on T1 and WMH on FLAIR MRI☆13Mar 28, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- MALPEM whole-brain segmentation framework☆27Feb 7, 2024Updated 2 years ago
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline Version 2☆36Updated this week
- Subdivides the surface-based Desikan-Killiany atlas into equally sized regions. Please cite: Romero-Garcia R, Atienza M, Clemmensen LH, C…☆23Oct 28, 2025Updated last year
- Neuroimgaing data processing pipelines used in the lab☆21Jul 23, 2019Updated 7 years ago
- AssemblyNet: 3D Whole Brain MRI segmentation pipeline☆81Jun 28, 2023Updated 3 years ago
- Optimized cerebral cortical surface mapping of neurite properties using diffsion magnetic resonace imaging (dMRI)☆16Oct 22, 2026Updated last week
- Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software pac…☆55Apr 26, 2026Updated 6 months ago
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆51May 19, 2021Updated 5 years ago
- Adding quality checks and confounds computation steps to fmriprep for stroke data.☆16Apr 14, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Learning joint Segmentation of Tissues And Brain Lesions (jSTABL) from task-specific hetero-modal domain-shifted datasets☆13Mar 24, 2025Updated last year
- A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://ww…☆31Oct 23, 2026Updated last week
- LGI: Cortical Shape-Adaptive Local Gyrification Index☆12Oct 13, 2020Updated 6 years ago
- PyTorch implementation of FastSurferCNN☆644Updated this week
- Code (in Matlab and R) to perform a spherical rotation (permutation) of a parcellated cortical map.☆53Jun 29, 2023Updated 3 years ago
- A package, and script, to perform imaging transcriptomics on a neuroimaging scan.☆16Jul 1, 2024Updated 2 years ago
- Automated plotting of neuroimaging maps from Python using Connectome Workbench.☆16Apr 3, 2024Updated 2 years ago
- niimath - a clone of fslmaths. Try the live demo:☆85Oct 26, 2026Updated last week
- Matlab for NIFTI support☆10Dec 26, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Crowd-sourced in vivo probabilistic atlas of subcortical brain nuclei☆12Mar 9, 2020Updated 6 years ago
- Robust Brain Extraction Tool for CT Head Images☆52Oct 7, 2020Updated 6 years ago
- BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)☆70Updated this week
- Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries☆43Jul 21, 2022Updated 4 years ago
- SPM Cluster Size Threshold estimation☆13Feb 6, 2023Updated 3 years ago
- ☆46Jun 5, 2026Updated 4 months ago
- GLioblastoma Image Analysis for integrating brain tumor growth models with medical imaging☆20Mar 30, 2023Updated 3 years ago
- Flow Processing Tool (Matlab) for 4D flow MRI data☆19Aug 21, 2026Updated 2 months ago
- ☆14Feb 9, 2026Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Whole Brain Segmentation and Parecllation Using OpenMAP-T1 Method for 3D T1 Brain MRI☆50Updated this week
- Perivascular (PVS) or Virchow–Robin Spaces (VRS) segmentation with a 3D Unet☆42Oct 7, 2026Updated 3 weeks ago
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆39Mar 21, 2025Updated last year
- ☆22Feb 23, 2026Updated 8 months ago
- Please visit our new location: https://github.com/tractometry/pyAFQ☆60Oct 10, 2024Updated 2 years ago
- nii_preprocess adapted for LARC and ABC studies at UofSC☆25Feb 16, 2022Updated 4 years ago
- An extended Human Connectome Project multimodal parcellation atlas of the human cortex and subcortical areas☆51Sep 24, 2024Updated 2 years ago