Towards a universal foundation model for biobank-scale human genome variation
☆17Dec 17, 2025Updated 7 months ago
Alternatives and similar repositories for SNPBag
Users that are interested in SNPBag are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Large scale ancestry inference from PCA data☆23May 2, 2023Updated 3 years ago
- ☆13Apr 23, 2025Updated last year
- STICI source code☆26Jan 13, 2026Updated 6 months ago
- GRUD is a genotype imputation based on deep learning algorithms☆11Jul 3, 2024Updated 2 years ago
- MPH is a C++ program for fast REML estimation of genetic (co)variance components.☆15Jan 5, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18Aug 23, 2025Updated 11 months ago
- Script used to identify de novo variants from sequencing data.☆12Mar 2, 2017Updated 9 years ago
- ☆18Oct 31, 2023Updated 2 years ago
- ☆13Jun 4, 2023Updated 3 years ago
- Convolutional autoencoder for genotype data☆15Feb 22, 2022Updated 4 years ago
- See https://biometris.github.io/statgenGWAS for a full description☆15Jul 16, 2026Updated 3 weeks ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆24Jun 14, 2024Updated 2 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Mar 31, 2026Updated 4 months ago
- a Semi-automated pipeline for assembling T2T genome☆28Oct 16, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆27Mar 4, 2025Updated last year
- Detection and classification selective sweep use domain adaptive model☆11Apr 29, 2024Updated 2 years ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆11Dec 12, 2022Updated 3 years ago
- Open mesh-to-mesh registration framework☆94Updated this week
- [deprecated] 🧬 Python API to fetch gnomAD data☆23Dec 9, 2021Updated 4 years ago
- Gene ontology (GO) semantic similarity library for Python☆24Sep 28, 2018Updated 7 years ago
- Frequently used commands in Bioinformatics☆22Apr 28, 2026Updated 3 months ago
- A transformer model to predict pathogenic mutations☆12Jun 25, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆27Oct 8, 2025Updated 10 months ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)☆28Jan 19, 2023Updated 3 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Toolkit for analyzing genetics data from admixed populations☆32Feb 13, 2025Updated last year
- Sparse Convolutional Denoising Autoencoders for Genotype Imputation☆14Aug 23, 2019Updated 6 years ago
- Fitting latent factor mixed models☆13Jun 12, 2020Updated 6 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- phyloGAN is a Generative Adversarial Network (GAN) that infers phylognetic relationships.☆11Jul 8, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 一个用来给科研工作者们询问chatgpt的提问模板，包括rephase refine and aimed journals☆32Mar 6, 2023Updated 3 years ago
- ☆16Jun 28, 2026Updated last month
- ☆13Jun 27, 2024Updated 2 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆38Jul 6, 2026Updated last month
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 9 years ago
- Code for "Dual Focal Loss for Calibration" (ICML 2023)☆31Apr 21, 2025Updated last year
- ☆97Aug 10, 2025Updated last year