Alternatives and similar repositories for Phenome_Model:

Users that are interested in Phenome_Model are comparing it to the libraries listed below

• landiisotta / convae_architecture
  ☆40Updated 3 years ago
• celehs / PheCAP
  https://celehs.github.io/PheCAP/
  ☆21Updated 3 years ago
• mit-caml / event-cui-transfer
  Corresponding code for experiments described in "Predicting Clinical Outcomes Across Changing Electronic Health Records." Presented at KD…
  ☆11Updated 7 years ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆108Updated last year
• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆133Updated last year
• beamandrew / cui2vec
  ☆53Updated 5 years ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆65Updated 9 months ago
• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆32Updated last year
• hibaahsan / MIMIC-SBDH
  Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs
  ☆14Updated 2 years ago
• sebastianGehrmann / phenotyping
  This repository contains data and code for the paper"Comparing deep learning and concept extraction based methods for patient phenotyping…
  ☆21Updated 6 years ago
• sirrice / icd9
  Python library for hierarchy of ICD9 Codes
  ☆104Updated 6 years ago
• OHDSI / PheValuator
  An R package for evaluating phenotype algorithms.
  ☆17Updated 6 months ago
• ZhiGroup / pytorch_ehr
  source codes based on PyTorch to analyze EHR
  ☆136Updated last year
• OHDSI / OncologyWG
  Oncology Working Group Repository
  ☆56Updated last week
• BenGlicksberg / PatientExploreR
  Dynamic visualization of Electronic Health Record data in the OMOP framework
  ☆28Updated 3 years ago
• RuishanLiu / TrialPathfinder
  ☆61Updated 3 years ago
• spiros / chronological-map-phenotypes
  Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
  ☆48Updated 10 months ago
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 4 years ago
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆76Updated last week
• OHDSI / Aphrodite
  [in development]
  ☆37Updated 3 years ago
• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆29Updated 7 years ago
• Yuqi92 / deep-patient-representation-mimiciii-multitask
  Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction
  ☆32Updated 5 years ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆67Updated 2 weeks ago
• yikuan8 / MIMIC-IV-Postgres
  Installing MIMIC-IV in a local Postgres database
  ☆41Updated 3 years ago
• EpistasisLab / MIMIC_trajectories
  ☆30Updated 7 years ago
• ncbo / ncbo_rest_sample_code
  Sample code that demonstrates the use of the NCBO REST services
  ☆44Updated last year
• ohdsi-studies / LegendT2dm
  ☆12Updated 3 months ago
• li-lab-mcgill / mixehr
  ☆16Updated 4 years ago
• AmsterdamUMC / AmsterdamUMCdb
  AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916
  ☆175Updated 3 months ago