rimmap / Phenome_ModelLinks
The Unsupervised Phenome Model (UPhenome) for learning phenotypes on heterogeneous EHR data
☆16Updated 9 years ago
Alternatives and similar repositories for Phenome_Model
Users that are interested in Phenome_Model are comparing it to the libraries listed below
Sorting:
- Mapping the MIMIC-III database to the OMOP schema☆141Updated last year
- Python package for machine learning for healthcare using a OMOP common data model☆110Updated 2 years ago
- Corresponding code for experiments described in "Predicting Clinical Outcomes Across Changing Electronic Health Records." Presented at KD…☆11Updated 8 years ago
- ☆41Updated 3 years ago
- Sample code that demonstrates the use of the NCBO REST services☆43Updated last year
- [in development]☆37Updated 4 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…☆83Updated 2 weeks ago
- https://celehs.github.io/PheCAP/☆22Updated 4 years ago
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆64Updated 2 months ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆70Updated 3 weeks ago
- Python implementation of POPDx - Predictions for unseen, rare, and common labels.☆11Updated last year
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆49Updated last year
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆47Updated 5 months ago
- An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.☆206Updated this week
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆69Updated 4 months ago
- Public release of the DeepPhe analytic software☆30Updated 3 weeks ago
- An R package for evaluating phenotype algorithms.☆21Updated 3 weeks ago
- Installing MIMIC-IV in a local Postgres database☆42Updated 4 years ago
- ☆12Updated 4 months ago
- MASI Lab Implementation of PheWAS in Python☆28Updated 10 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- source codes based on PyTorch to analyze EHR☆147Updated last year
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records☆24Updated 4 years ago
- Introduction to MIMIC-III, the Critical Care Database☆86Updated 8 years ago
- Oncology Working Group Repository☆57Updated 2 weeks ago
- An R package for performing various cohort diagnostics.☆47Updated 2 weeks ago
- PIC (Pediatric Intensive Care) database☆43Updated 2 years ago
- ☆55Updated 5 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 7 years ago
- ☆16Updated 5 years ago