markziemann / 5pillarsLinks
Five pillars of computational reproducibility
☆11Updated last year
Alternatives and similar repositories for 5pillars
Users that are interested in 5pillars are comparing it to the libraries listed below
Sorting:
- Pathogen evolution, selection and immunity☆45Updated last year
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated last year
- Tools for evolutionary forecasting☆14Updated 2 months ago
- R Package growthrates☆27Updated 3 months ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated last week
- Computes affinity between two entities based on their co-occurrence☆27Updated 5 months ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 6 months ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆22Updated last month
- A repo hosting the combined lectures of a course on Fundamentals of Computational Biology☆14Updated 2 years ago
- Conditional Auto-Regressive LASSO in R☆20Updated 3 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- A ggplot2 based biplot for principal components-like methods☆12Updated 2 months ago
- Lightweight header-only C++ library for loading and traversing trees☆20Updated 9 months ago
- Display utilities for phylogenetic trees and networks☆17Updated 2 weeks ago
- Racmacs R package for performing antigenic cartography☆24Updated last year
- Phylogenetic inference using Stan☆23Updated 9 months ago
- Tools for Working with Taxonomic SQL Databases☆33Updated last month
- ☆11Updated 7 months ago
- babette is an R package to work with BEAST2☆46Updated last month
- ☆13Updated last year
- A Reproducible Untargeted Metabolomics Data Processing Pipeline☆11Updated 4 years ago
- ☆19Updated 2 weeks ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated 2 weeks ago
- Calculate distances between phylogenetic trees in R☆34Updated 3 weeks ago
- The R package manager that is blazingly fast ⚡. Powered by mamba.☆77Updated 3 years ago
- Explore spaces of phylogenetic trees☆29Updated 3 months ago
- Tutorials for data science and bioinformatics☆13Updated last year
- Seamless Integration of BLAST Sequence Searches in R☆30Updated 2 years ago
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆13Updated 2 years ago
- ☆14Updated 5 years ago