fulcrumgenomics / soptLinks
An argument parsing library for Scala
☆11Updated last month
Alternatives and similar repositories for sopt
Users that are interested in sopt are comparing it to the libraries listed below
Sorting:
- Load genomic BAM files using Apache Spark☆21Updated 7 years ago
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆69Updated 3 years ago
- Bioinformatics for the Scala programming language☆111Updated last year
- Client for the Cromwell workflow engine☆17Updated last year
- ☆15Updated 3 months ago
- A fast, parallel, streaming multipart uploader for S3☆13Updated 8 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Updated 8 years ago
- Notebook service☆44Updated this week
- ☆12Updated 7 years ago
- A bioinformatics library for Scala☆12Updated 8 years ago
- Useful extensions to Scala's Iterator☆12Updated last year
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 4 months ago
- ☆31Updated this week
- Pipeline for Recombinant Yeast genoMEs That Identifies Markers of Engineering☆12Updated last year
- Convert CWL to WDL☆17Updated 8 years ago
- Explore and analyze biological sequence data☆16Updated 11 months ago
- LoFreq Version 3☆27Updated 4 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- ☆21Updated 6 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆71Updated last year
- A pipeline for Human GWAS analysis that accomodates both Affymetrix (raw .CEL files) and Illumina (Plink binaries) data☆12Updated 7 years ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Updated 7 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆40Updated 5 months ago
- Graphical assessment of structrial variants using 10x genomics data☆10Updated 8 years ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆23Updated 8 years ago
- Command line tool for Wave containers provisioning service☆15Updated last week
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago