Alternatives and similar repositories for sopt

Users that are interested in sopt are comparing it to the libraries listed below

• hammerlab / spark-bam
  Load genomic BAM files using Apache Spark
  ☆21Updated 7 years ago
• fulcrumgenomics / dagr
  A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs
  ☆69Updated 3 years ago
• bioscala / bioscala
  Bioinformatics for the Scala programming language
  ☆112Updated 3 months ago
• BD2KGenomics / conductor
  Efficient, distributed downloads of large files from S3 to HDFS using Spark.
  ☆17Updated 8 years ago
• johandahlberg / piper
  A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…
  ☆21Updated 9 years ago
• antonkulaga / cromwell-client
  Client for the Cromwell workflow engine
  ☆17Updated last year
• DataBiosphere / leonardo
  Notebook service
  ☆44Updated last week
• BD2KGenomics / s3am
  A fast, parallel, streaming multipart uploader for S3
  ☆14Updated 8 years ago
• broadinstitute / rawls
  Rawls service for DSDE
  ☆26Updated last week
• broadinstitute / firecloud-orchestration
  ☆31Updated this week
• cjfields / bioperl6
  reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)
  ☆48Updated 7 years ago
• JaneliaSciComp / nextflow-spark
  ☆15Updated 7 months ago
• arq5x / piledriver
  Basic, no assumptions, multi-pileup
  ☆24Updated 11 years ago
• brentp / indelope
  find large indels (in the blind spot between GATK/freebayes and SV callers)
  ☆39Updated 7 years ago
• emyounglab / prymetime
  Pipeline for Recombinant Yeast genoMEs That Identifies Markers of Engineering
  ☆12Updated last year
• BD2KGenomics / cgl-docker-lib
  ☆21Updated 6 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆48Updated 5 years ago
• JetBrains-Research / big
  BigWIG, BigBED and TDF for the JVM
  ☆14Updated 4 years ago
• broadinstitute / sam
  workbench identity and access management
  ☆42Updated last week
• nh13 / pbgzip
  Parallel Block GZIP
  ☆50Updated 9 years ago
• ucdavis-bioinformatics / sickle
  Windowed Adaptive Trimming for fastq files using quality
  ☆25Updated 10 years ago
• andreas-wilm / lofreq3
  LoFreq Version 3
  ☆27Updated 4 years ago
• bigdatagenomics / avocado
  A Variant Caller, Distributed. Apache 2 licensed.
  ☆71Updated 6 years ago
• veact / scala-ssh
  Remote shell access via SSH for your Scala applications
  ☆24Updated 8 years ago
• nboley / grit
  ☆12Updated 7 years ago
• wtsi-npg / bambi
  Process Illumina instrument data into SAM/BAM/CRAM files.
  ☆10Updated this week
• biod / BioD
  A D library for computational biology and bioinformatics
  ☆49Updated 3 years ago
• sbt / sbt-export-repo
  exports your dependency graph to a preloaded local repository
  ☆15Updated 6 years ago
• marbl / metAMOS
  A metagenomic and isolate assembly and analysis pipeline built with AMOS
  ☆94Updated 8 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆31Updated 9 years ago