An argument parsing library for Scala
☆12May 19, 2026Updated 4 months ago
Alternatives and similar repositories for sopt
Users that are interested in sopt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆70May 27, 2022Updated 4 years ago
- Vorlesung "Tabular Database Systems" im SS 2025 (U Tübingen)☆17Jul 20, 2025Updated last year
- A better, faster way to count guides in CRISPR screens.☆35Apr 30, 2026Updated 5 months ago
- ☆15Jul 9, 2022Updated 4 years ago
- Scala SBT (Giter8) Template (Multi-Module with App)☆10Dec 23, 2016Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Java Bindings (JNI) for bwa☆22Dec 15, 2016Updated 9 years ago
- Scala implementation of Aho-Corasick algorithm☆15May 21, 2026Updated 4 months ago
- Example code for the course "Introduction to OOP programming" in Ariel University☆11Jan 15, 2018Updated 8 years ago
- ☆18Sep 30, 2025Updated last year
- Ariel university C++ course, year 5779☆15Aug 10, 2020Updated 6 years ago
- Python interface to the GenoLogics LIMS server via its REST API.☆30Aug 13, 2025Updated last year
- Performance focused interpolation☆33Oct 7, 2026Updated last week
- A high-performance HGVS variant nomenclature parser and normalizer written in Rust☆30Oct 10, 2026Updated last week
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Processing and analysis of data coming from Illumina sequencing machines☆11Updated this week
- This repository contains information about latest release from Genome in a Bottle project☆75Aug 30, 2019Updated 7 years ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 9 years ago
- Asynchronous Java NIO http/2 only packet streaming server with TLS encryption implemented as Scala CATS effect. Direct native translatio…☆15Aug 29, 2025Updated last year
- A web app showing you possible binary incompatibilities in your Scala code☆12Sep 16, 2026Updated last month
- Small library for reading configuration into case classes☆46Updated this week
- ☆19Oct 13, 2023Updated 3 years ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 8 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jul 6, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Regular expression library for Scala☆24Feb 5, 2025Updated last year
- Deciphering spatial ecotypes from spatial, single-cell, and bulk transcriptomic data☆50Sep 25, 2026Updated 3 weeks ago
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 10 months ago
- ☆10Nov 9, 2022Updated 3 years ago
- Utility for transposing multi-dimensional data☆19Feb 20, 2024Updated 2 years ago
- ☆11Aug 3, 2018Updated 8 years ago
- An automated post sequencing data processing pipeline for Illumina HiSeq☆14Oct 5, 2026Updated last week
- Python implementation of Dijkstra's shortest path algorithm☆42Jun 29, 2014Updated 12 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 10 years ago
- POC problems and template for full stack scala☆14Feb 28, 2024Updated 2 years ago
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Jun 25, 2026Updated 3 months ago
- Tools for working with genomic and high throughput sequencing data.☆374Oct 7, 2026Updated last week
- A small, convenient, dependency-free library for command-line argument parsing in Scala☆216Jan 14, 2026Updated 9 months ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Documentation for the .NET Bio project☆11Sep 20, 2017Updated 9 years ago