This repository includes the codes and descriptions to create a fully annotated dataset of nuclei from cryosectioned histological samples.
☆45Feb 8, 2023Updated 3 years ago
Alternatives and similar repositories for CryoNuSeg
Users that are interested in CryoNuSeg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The code of Triple U-net: Hematoxylin-aware Nuclei Segmentation with Progressive Dense Feature Aggregation.☆20Mar 17, 2022Updated 4 years ago
- This Repository is project directory of the Distance Regression and Classification Network (DRCA-Net).DRCA-net is convolutional neural ne…☆13Jan 29, 2021Updated 5 years ago
- This repository contains my implementations of the algorithms which MoNuSAC participants could use for data preparation to train their mo…☆67Dec 2, 2021Updated 4 years ago
- CoNIC Challenge☆69Feb 19, 2024Updated 2 years ago
- SONNET: A self-guided ordinal regression neural network for segmentation and classification of nuclei in large-scale multi-tissue histolo…☆17Sep 15, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- StarDist PyTorch☆47Nov 13, 2022Updated 3 years ago
- ☆37Oct 26, 2021Updated 4 years ago
- CNN based segmentation codes☆48Jan 19, 2023Updated 3 years ago
- Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.☆698Oct 27, 2023Updated 2 years ago
- Nuclei segmentation and classification (Cancer cells)☆25Jun 4, 2024Updated last year
- Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…☆177Apr 1, 2022Updated 3 years ago
- Class for getting ROIs and masks from annotated pyramidal images. A work in progress.☆12Jul 3, 2021Updated 4 years ago
- Instance-based Vision Transformer for Subtyping of Papillary Renal Cell Carcinoma in Histopathological Image-MICCAI 2021☆15Dec 26, 2023Updated 2 years ago
- Official PyTorch implementation of the TMI paper "Nucleus-aware Self-supervised Pretraining Using Unpaired Image-to-image Translation for…☆16Mar 13, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Evaluation code for the PanNuke dataset☆29Oct 20, 2020Updated 5 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆268Dec 23, 2023Updated 2 years ago
- SegNet, Unet, and DeepLabV3 for Semantic Segmentation using Keras.☆10Jan 19, 2023Updated 3 years ago
- cGAN-based Multi Organ Nuclei Segmentation☆195Jun 10, 2022Updated 3 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆56Apr 4, 2022Updated 3 years ago
- This repository is the official implementation of "Distribution based MIL pooling filters: experiments on a lymph node metastases dataset…☆10Nov 25, 2023Updated 2 years ago
- ☆32Jan 22, 2021Updated 5 years ago
- Code for replicating results presented in the paper: "Quantifying Explainers of Graph Neural Networks in Computational Pathology"☆44May 19, 2021Updated 4 years ago
- Predicting Axillary Lymph Node Metastasis in Early Breast Cancer Using Deep Learning on Primary Tumor Biopsy Slides, BCNB Dataset☆68Nov 10, 2025Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- GNN-based cancer prognosis prediction using image-derived Cell-Graphs☆14Oct 14, 2021Updated 4 years ago
- Self-supervised nuclei segmentation (MICCAI 2020)☆44Feb 16, 2021Updated 5 years ago
- List of academic institutes/companies working on computer-based digital pathology image analysis☆45Aug 7, 2025Updated 7 months ago
- ☆23Feb 4, 2020Updated 6 years ago
- An open-source digital pathology based rapid image annotation tool☆90Feb 26, 2026Updated last month
- This is the official code for the paper Learning Represenations with Contrastive Self-Supervised Learning for Histopathology Applications☆13Aug 17, 2022Updated 3 years ago
- ☆17Aug 8, 2022Updated 3 years ago
- This is the official code of the paper "Nuclei Segmentation with Point Annotations from Pathology Images via Self-Supervised Learning and…☆19Jan 9, 2024Updated 2 years ago
- Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classification | https://arxiv.org/abs/2105.02726☆25Oct 11, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆112Nov 8, 2025Updated 4 months ago
- Hierarchical Deep Multiple Instance Learning☆11Jun 30, 2023Updated 2 years ago
- ☆14Nov 21, 2022Updated 3 years ago
- Fast, scalable whole-slide tiling☆59Updated this week
- Medical image retrieval using SOAT feature extractor☆13Oct 1, 2025Updated 5 months ago
- Implementation of PyTorch-based multi-task pre-trained models☆33Oct 8, 2020Updated 5 years ago
- The code for Kernel attention transformer (KAT)☆35Jun 13, 2024Updated last year