Alternatives and similar repositories for PromptProtein

Users that are interested in PromptProtein are comparing it to the libraries listed below

• bowen-gao / DrugCLIP
  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
  ☆102Updated last year
• biomed-AI / MUSE
  ☆26Updated last year
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆109Updated last year
• yuanqm55 / GraphPPIS
  Protein-protein interacting site predictor using deep graph convolutional network
  ☆11Updated 2 years ago
• peizhenbai / DrugBAN
  Interpretable bilinear attention network with domain adaptation improves drug-target prediction.
  ☆126Updated 2 years ago
• guaguabujianle / MGraphDTA
  ☆53Updated 11 months ago
• yazdanimehdi / AttentionSiteDTI
  This is The repository for Paper "AttentionSiteDTI: Attention Based Model for Predicting Drug-Target Interaction Using Graph Representati…
  ☆44Updated last year
• Layne-Huang / PMDM
  ☆137Updated 2 weeks ago
• wyky481l / MMCD
  ☆30Updated 9 months ago
• huankoh / PSICHIC
  PSICHIC (pronounced Psychic) - PhySIcoCHemICal graph neural network for learning protein-ligand interaction fingerprints from sequence da…
  ☆113Updated last year
• lvguofeng / GNN_PPI
  Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".
  ☆80Updated 3 years ago
• 595693085 / DGraphDTA
  a novel DTA predition method using graph neural network
  ☆74Updated 2 years ago
• zaixizhang / Awesome-SBDD
  Papers about Structure-based Drug Design (SBDD)
  ☆120Updated 8 months ago
• BytedProtein / ByProt
  ☆199Updated 10 months ago
• zaixizhang / FLAG
  Implementation of ICLR23 paper "Molecule Generation for Target Protein Binding with Structural Motifs"
  ☆69Updated last year
• JU-HuaY / MFR
  ☆10Updated last year
• CSUBioGroup / BACPI
  A bi-directional attention neural network for compound–protein interaction and binding affinity prediction.
  ☆32Updated 2 years ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆117Updated 5 months ago
• wengong-jin / RefineGNN
  ☆130Updated 2 years ago
• TianZhuAI4S / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆37Updated last year
• ykiiiiii / GraDe_IF
  Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
  ☆66Updated last year
• LirongWu / Prompt-DDG
  Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical P…
  ☆42Updated 10 months ago
• lmqfly / Geometry-Deep-Learning-for-Drug-Discovery
  Geometry Deep Learning for Drug Discovery and Life Science
  ☆71Updated last year
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆96Updated 2 years ago
• ChengF-Lab / ImageMol
  ☆45Updated last year
• OdinZhang / ResGen
  3D_Molecular_Generation
  ☆98Updated 8 months ago
• zhengkangjie / ESM-AA
  ☆75Updated 6 months ago
• agave233 / GeomGCL
  Official implementation for AAAI 2022 paper: "GeomGCL: Geometric Graph Contrastive Learning for Molecular Property Prediction".
  ☆22Updated 3 years ago
• wengong-jin / abdockgen
  ☆106Updated 2 years ago
• Ced3-han / PepFlowww
  Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)
  ☆90Updated 2 months ago