Alternatives and similar repositories for async-pubmed-scraper

Users that are interested in async-pubmed-scraper are comparing it to the libraries listed below

• metapub / metapub
  Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
  ☆140Updated 4 months ago
• ddomingof / PubMed2PDF
  A Python package to download full article PDFs from OA publications
  ☆53Updated 11 months ago
• biocypher / biochatter
  Backend library for conversational AI in biomedicine
  ☆195Updated 3 weeks ago
• krassowski / easy-entrez
  Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …
  ☆79Updated 2 years ago
• ncbi-nlp / pubtator-gpt
  ☆32Updated 2 years ago
• tatonetti-lab / onsides
  A resource of adverse drug effects extracted from FDA structured product labels
  ☆88Updated 6 months ago
• mims-harvard / SHEPHERD
  SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
  ☆77Updated 6 months ago
• jvfe / pytrials
  Python package that wraps around the ClinicalTrials.gov API
  ☆57Updated last year
• ckoenigs / PharMeBINet
  Build PharMeBINet from different sources.
  ☆20Updated 3 weeks ago
• billgreenwald / Pubmed-Batch-Download
  Batch download articles based on PMID (Pubmed ID)
  ☆132Updated 2 years ago
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆66Updated 6 years ago
• insilicomedicine / precious3-gpt
  Wrappers for easier generative biology workflows
  ☆17Updated 3 months ago
• Novartis / ChemBioMultimodalAutoencoders
  a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures
  ☆29Updated 2 years ago
• iit-Demokritos / drug_id_mapping
  Cross matching drugs from different databases ( Drugbank, STITCH, ChEMBL PubChem, UMLS, TTD, KEGG, ZINC ) and saving in a structured TSV …
  ☆34Updated last year
• mims-harvard / ClinVec
  ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine
  ☆73Updated 4 months ago
• healx / automated-biological-evidence-generation-in-drug-discovery
  Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…
  ☆12Updated last year
• SuLab / DrugMechDB
  A database of paths that represent the mechanism of action from a drug to a disease in an indication.
  ☆65Updated 2 months ago
• CMRI-ProCan / DeePathNet
  ☆13Updated last month
• ncbi / AIONER
  AIONER
  ☆62Updated last year
• Orphanet / Orphadata_aggregated
  Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases
  ☆53Updated 3 weeks ago
• biocypher / biochatter-light
  The light frontend for BioChatter, in pure Python
  ☆54Updated 5 months ago
• wikipathways / pywikipathways
  Python Client Package for WikiPathways
  ☆23Updated last month
• EpistasisLab / AlzKB
  ☆20Updated last year
• biocypher / biocypher
  A unifying framework for biomedical research knowledge graphs
  ☆283Updated 3 weeks ago
• Sanofi-Public / CodonBERT
  Repository for mRNA Paper and CodonBERT publication.
  ☆139Updated last year
• dhimmel / drugbank
  User-friendly extensions of the DrugBank database
  ☆194Updated 6 years ago
• MaayanLab / HarmonizomePythonScripts
  ☆26Updated 2 weeks ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆77Updated 10 months ago
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆54Updated 5 months ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆96Updated 10 months ago