IliaZenkov / async-pubmed-scraperLinks
PubMed scraper for async search on a list of keywords and concurrent extraction of all found URLs, returning a DataFrame/CSV containing all article data (title, abstract, authors, affiliations, etc)
☆43Updated 5 years ago
Alternatives and similar repositories for async-pubmed-scraper
Users that are interested in async-pubmed-scraper are comparing it to the libraries listed below
Sorting:
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆133Updated 2 months ago
- A Python package to download full article PDFs from OA publications☆51Updated 10 months ago
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆79Updated 2 years ago
- Batch download articles based on PMID (Pubmed ID)☆132Updated 2 years ago
- A resource of adverse drug effects extracted from FDA structured product labels☆84Updated 5 months ago
- Backend library for conversational AI in biomedicine☆191Updated 2 weeks ago
- ☆31Updated last year
- Cross matching drugs from different databases ( Drugbank, STITCH, ChEMBL PubChem, UMLS, TTD, KEGG, ZINC ) and saving in a structured TSV …☆34Updated last year
- Python package that wraps around the ClinicalTrials.gov API☆56Updated last year
- A unifying framework for biomedical research knowledge graphs☆278Updated this week
- Build PharMeBINet from different sources.☆20Updated this week
- Website code for COCONUT☆35Updated 2 years ago
- A collection of available Python tools for Proteomics analysis☆63Updated 6 years ago
- Word2Vec based similarity measure of mass spectrometry data.☆77Updated 2 weeks ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆77Updated last week
- AIONER☆62Updated last year
- StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…☆35Updated 2 years ago
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases☆77Updated 4 months ago
- Codebase for BioPathNet to predict links in biomedical knowledge graphs☆14Updated 2 months ago
- Wrappers for easier generative biology workflows☆15Updated 2 months ago
- The light frontend for BioChatter, in pure Python☆54Updated 4 months ago
- Open-Source package for segmentation and analysis of gel electrophoresis images using machine learning. Both a python framework for trai…☆80Updated 4 months ago
- ☆20Updated 3 years ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆39Updated last year
- ☆19Updated last year
- ☆49Updated 7 months ago
- Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utilit…☆32Updated 5 years ago
- BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models☆14Updated 3 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated 2 weeks ago
- Repository for mRNA Paper and CodonBERT publication.☆134Updated last year