Alternatives and similar repositories for async-pubmed-scraper

Users that are interested in async-pubmed-scraper are comparing it to the libraries listed below

• ddomingof / PubMed2PDF
  A Python package to download full article PDFs from OA publications
  ☆53Updated last year
• metapub / metapub
  Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
  ☆141Updated 5 months ago
• tatonetti-lab / onsides
  A resource of adverse drug effects extracted from FDA structured product labels
  ☆89Updated last week
• iit-Demokritos / drug_id_mapping
  Cross matching drugs from different databases ( Drugbank, STITCH, ChEMBL PubChem, UMLS, TTD, KEGG, ZINC ) and saving in a structured TSV …
  ☆34Updated 2 years ago
• Novartis / ChemBioMultimodalAutoencoders
  a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures
  ☆29Updated 2 years ago
• ncbi-nlp / pubtator-gpt
  ☆32Updated 2 years ago
• biocypher / biochatter
  Backend library for conversational AI in biomedicine
  ☆195Updated last week
• SuLab / DrugMechDB
  A database of paths that represent the mechanism of action from a drug to a disease in an indication.
  ☆67Updated 2 months ago
• Orphanet / Orphadata_aggregated
  Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases
  ☆53Updated last month
• krassowski / easy-entrez
  Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …
  ☆80Updated 2 years ago
• emyyue / BioPathNet
  Codebase for BioPathNet to predict links in biomedical knowledge graphs
  ☆22Updated last week
• CMRI-ProCan / DeePathNet
  ☆14Updated last month
• jvfe / pytrials
  Python package that wraps around the ClinicalTrials.gov API
  ☆59Updated last year
• billgreenwald / Pubmed-Batch-Download
  Batch download articles based on PMID (Pubmed ID)
  ☆133Updated 2 years ago
• AstraZeneca / StarGazer
  StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…
  ☆35Updated 2 years ago
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆67Updated 6 years ago
• ckoenigs / PharMeBINet
  Build PharMeBINet from different sources.
  ☆20Updated 2 weeks ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆80Updated 2 months ago
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆29Updated 11 months ago
• biocypher / biocypher
  A unifying framework for biomedical research knowledge graphs
  ☆285Updated last week
• biocypher / biochatter-light
  The light frontend for BioChatter, in pure Python
  ☆54Updated last week
• ncbi / AIONER
  AIONER
  ☆62Updated last year
• PaccMann / paccmann_predictor
  PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…
  ☆54Updated 5 months ago
• astrazeneca-cgr-publications / DrugnomeAI-release
  ☆19Updated last year
• MaayanLab / L1000toRNAseq
  ☆20Updated 3 years ago
• djwooten / synergy
  Python library for calculting synergy of drug combinations using several drug synergy frameworks
  ☆36Updated last year
• mims-harvard / Madrigal
  Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data
  ☆39Updated 5 months ago
• sdecesco / targetDB
  TargetDB is a tool to quickly querry multiple publicly available databases and provide an integrated view of the information available ab…
  ☆32Updated last year
• mims-harvard / ClinVec
  ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine
  ☆75Updated last week
• dhimmel / drugbank
  User-friendly extensions of the DrugBank database
  ☆196Updated 6 years ago