IliaZenkov / async-pubmed-scraper
PubMed scraper for async search on a list of keywords and concurrent extraction of all found URLs, returning a DataFrame/CSV containing all article data (title, abstract, authors, affiliations, etc)
☆37Updated 4 years ago
Alternatives and similar repositories for async-pubmed-scraper:
Users that are interested in async-pubmed-scraper are comparing it to the libraries listed below
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆114Updated 2 months ago
- A Python package to download full article PDFs from OA publications☆41Updated 2 months ago
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆76Updated last year
- Build PharMeBINet from different sources.☆15Updated last month
- Batch download articles based on PMID (Pubmed ID)☆120Updated last year
- The light frontend for BioChatter, in pure Python☆53Updated last month
- A resource of adverse drug effects extracted from FDA structured product labels☆70Updated last month
- ☆15Updated 6 months ago
- A collection of available Python tools for Proteomics analysis☆55Updated 5 years ago
- Leveraging☆11Updated last year
- Code for 5UTR project☆24Updated last year
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆56Updated 3 weeks ago
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆47Updated 3 months ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆33Updated 9 months ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆59Updated last year
- Backend library for conversational AI in biomedicine☆145Updated this week
- A deep learning model to predict anticancer peptides.☆23Updated 5 years ago
- ☆21Updated last year
- ☆33Updated last year
- Code for the paper "Antimicrobial resistance prediction in clinical isolates through machine learning on MALDI-TOF mass spectra"☆40Updated 2 years ago
- ☆9Updated 5 months ago
- AIONER☆52Updated 8 months ago
- a module to calculate the MeSH similarity☆24Updated 3 years ago
- ☆13Updated last week
- ☆32Updated 2 weeks ago
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆109Updated 2 years ago
- https://cimcb.github.io/MetabComparisonBinaryML/☆17Updated 11 months ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆28Updated 11 months ago
- Python library for calculting synergy of drug combinations using several drug synergy frameworks☆35Updated 5 months ago
- Cross matching drugs from different databases ( Drugbank, STITCH, ChEMBL PubChem, UMLS, TTD, KEGG, ZINC ) and saving in a structured TSV …☆21Updated last year