☆40Mar 1, 2026Updated 2 weeks ago
Alternatives and similar repositories for Protein-Language-Models
Users that are interested in Protein-Language-Models are comparing it to the libraries listed below
Sorting:
- PyPEF – Pythonic Protein Engineering Framework☆25Sep 20, 2025Updated 6 months ago
- ☆37Dec 21, 2023Updated 2 years ago
- Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters.☆16Dec 20, 2022Updated 3 years ago
- GROM is a GROMACS(mdp,itp,top) files with Syntax Highlighting and PDB Editor with visual cues in one package based on Qt5,PyQt5 and Pyth…☆11Nov 14, 2016Updated 9 years ago
- Official implementation of "Learning the language of protein structures"☆41Jun 20, 2025Updated 9 months ago
- Analysis of alphafold and colabfold results☆36Updated this week
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- pytorch implementation of trDesign☆44Mar 19, 2021Updated 5 years ago
- Binding pocket optimization based on force fields and docking scoring functions☆37Mar 19, 2025Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆62May 21, 2025Updated 9 months ago
- neuropeptide prediction☆13Sep 2, 2022Updated 3 years ago
- Epitope Prediction Pipeline and analysis tools built around AlphaFold 2☆20May 9, 2024Updated last year
- ☆48Sep 25, 2024Updated last year
- TFold v1.0☆35Jul 16, 2024Updated last year
- 2016: Molecular dynamics simulation of an Argon gas☆15Jun 24, 2016Updated 9 years ago
- DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…☆13Sep 20, 2022Updated 3 years ago
- Generates Martini models for open carbon nanotubes to use with Gromacs.☆15Nov 24, 2021Updated 4 years ago
- Ollama Modelfile Template☆20Mar 4, 2024Updated 2 years ago
- Assessing the impact of mutations on antibody-antigen binding affinity☆18Dec 7, 2020Updated 5 years ago
- Code for Fold2Seq paper from ICML 2021☆50May 25, 2022Updated 3 years ago
- MDplot: Visualise Molecular Dynamics☆30Mar 23, 2022Updated 3 years ago
- MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules☆21Mar 21, 2025Updated 11 months ago
- ☆13Dec 5, 2024Updated last year
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 4 years ago
- Automated workflow for preparing tilt series data for RELION 4.0.☆13Dec 17, 2023Updated 2 years ago
- Adaptive landscape flattening scripts for MSLD☆17Mar 10, 2026Updated last week
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆35Nov 10, 2025Updated 4 months ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆11Jan 25, 2026Updated last month
- Software for macromolecular model-building☆18Mar 12, 2026Updated last week
- A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib☆19May 20, 2024Updated last year
- Code for "FG-BERT: A Self-Supervised Molecular Representation Learning Method Based on Functional Groups"☆29Jan 16, 2024Updated 2 years ago
- Recursively extract urls from a web page for reconnaissance.☆12Jun 9, 2024Updated last year
- Collected scripts for Pymol☆10Mar 18, 2015Updated 11 years ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 4 years ago
- Contact Prediction ToolKit☆22Feb 11, 2026Updated last month
- ☆183Oct 27, 2021Updated 4 years ago
- ☆12Jun 16, 2023Updated 2 years ago
- ☆10Nov 10, 2023Updated 2 years ago