MDplot / MDplotLinks
MDplot: Visualise Molecular Dynamics
☆28Updated 3 years ago
Alternatives and similar repositories for MDplot
Users that are interested in MDplot are comparing it to the libraries listed below
Sorting:
- Analysis of non-covalent interactions in MD trajectories☆57Updated 5 months ago
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆46Updated 5 months ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆25Updated last week
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆68Updated 2 months ago
- Fully automated high-throughput MD pipeline☆60Updated 3 weeks ago
- Molecular Dynamics for Experimentalists☆57Updated this week
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- Analysis of contacts in molecular dynamics trajectories☆42Updated 5 years ago
- Utilities to assist with Amber Molecular Dynamics structure preparation and MMPBSA.py energy methods☆20Updated 5 years ago
- Collection of Python scripts to setup and run simulations with OpenMM☆17Updated 5 years ago
- MD pharmacophores and virtual screening☆33Updated last year
- Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…☆58Updated 2 months ago
- Python scripts to convert CGenFF stream files to GROMACS format☆36Updated last month
- ☆39Updated 10 months ago
- Interface to OpenMM for easy setup of molecular dynamic simulations of protein-ligand complexes☆132Updated last week
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆33Updated last year
- PyDock Tutorial☆32Updated 6 years ago
- Trusted force field files for gromacs☆50Updated 7 months ago
- Computational Chemistry Workflows☆53Updated 2 years ago
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆69Updated 4 months ago
- ☆90Updated 3 months ago
- (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆69Updated last year
- Full automation of relative protein-ligand binding free energy calculations in GROMACS☆44Updated 4 years ago
- ☆12Updated 4 years ago
- Automated construction of protein chimeras and their analysis.☆14Updated last year
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆81Updated last month
- Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by …☆27Updated 11 months ago
- ☆65Updated last year
- MM-PBSA method for GROMACS. For full description, please visit homepage:☆67Updated this week
- Random Acceleration Molecular Dynamics in GROMACS☆37Updated 10 months ago