GuyAllard / markov_clusteringLinks
markov clustering in python
☆175Updated 4 years ago
Alternatives and similar repositories for markov_clustering
Users that are interested in markov_clustering are comparing it to the libraries listed below
Sorting:
- A package for combining multiple partitions into a consolidated clustering. The combinatorial optimization problem of obtaining such a co…☆74Updated 3 years ago
- A collection of Python scripts that implement various graph clustering algorithms, specifically for identifying protein complexes from pr…☆94Updated 7 years ago
- Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.☆41Updated 4 years ago
- Integrative orthogonal non-negative matrix factorization☆32Updated 6 years ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- Hierarchical graph clustering☆38Updated 7 years ago
- Implementation of the Louvain algorithm for community detection with various methods for use with igraph in python.☆254Updated last year
- OBO-formatted ontologies → networkx (Python 3)☆150Updated 9 months ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 6 years ago
- plot chord diagram with matplotlib☆84Updated 4 years ago
- Gene ontology (GO) semantic similarity library for Python☆24Updated 7 years ago
- ☆19Updated last year
- A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec☆172Updated 2 weeks ago
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆46Updated 5 years ago
- Bioinformatics in Python☆58Updated last year
- Code for ensemble clustering☆102Updated 8 months ago
- Prioritizing network communities☆31Updated 5 years ago
- Fast hierarchical clustering routines for R and Python.☆154Updated last week
- ☆29Updated 8 years ago
- Python Wrapper for FIt-SNE☆45Updated 4 years ago
- Python wrapper for the Kavosh network motif finder☆52Updated 11 years ago
- Tools for building and manipulating graphs in Python☆46Updated last week
- Draw UpSet plots with Matplotlib☆373Updated last year
- graph-tool - Efficient network analysis☆109Updated 2 years ago
- NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chrom…☆27Updated 4 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- A flexible version of CorEx developed for bio-data challenges that handles missing data, continuous/discrete variables, multi-CPU, overla…☆143Updated 4 years ago
- OhmNet: Representation learning in multi-layer graphs☆84Updated 5 years ago
- Fastest Gephi's ForceAtlas2 graph layout algorithm implemented for Python and NetworkX☆304Updated last year
- Contrastive PCA☆231Updated 2 months ago