A collection of Python scripts that implement various graph clustering algorithms, specifically for identifying protein complexes from protein-protein interaction networks.
☆96Nov 7, 2018Updated 7 years ago
Alternatives and similar repositories for python-graph-clustering
Users that are interested in python-graph-clustering are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- all-paths graph kernel for protein-protein interaction extraction☆12Apr 22, 2014Updated 11 years ago
- Attributed graph datasets with ground truth clusters☆12Aug 9, 2022Updated 3 years ago
- Worked with a number of real-world datasets available at http://snap.stanford.edu/ to identify the importance of certain nodes in terms o…☆11Dec 20, 2016Updated 9 years ago
- Docker image of JBrowse Genome Browser☆15Apr 12, 2021Updated 4 years ago
- A python implementation of PROCLUS: PROjected CLUStering algorithm.☆10Jan 12, 2015Updated 11 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Hierarchical Multi-View Graph Pooling with Structure Learning (TKDE-2021)☆24Nov 2, 2022Updated 3 years ago
- Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.☆12Apr 7, 2017Updated 8 years ago
- Python Benchmarking Framework for the Clustering Algorithms Evaluation: networks generation and shuffling; failover execution and resourc…☆18Nov 28, 2018Updated 7 years ago
- Software for error-tolerant coding of information into DNA sequences using finite-state transducers.☆12Jan 8, 2017Updated 9 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- Biological Graphic tool in Python☆34May 14, 2020Updated 5 years ago
- Predicting drug-target interactions using Lasso with random forest based on evolutionary information and chemical structure☆10Nov 19, 2018Updated 7 years ago
- ☆16Oct 11, 2023Updated 2 years ago
- Nilearn tutorials for OHBM 2016 educational course☆13Jul 13, 2016Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Code for "Distributed, Egocentric Representations of Graphs for Detecting Critical Structures" (ICML 2019)☆20Aug 24, 2021Updated 4 years ago
- The Pytorch implementation of "NCAGC: A Neighborhood Contrast Framework for Attributed Graph Clustering"☆17Jul 28, 2024Updated last year
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Dec 18, 2021Updated 4 years ago
- ☆51Oct 24, 2016Updated 9 years ago
- Open source code for paper "EDITS: Modeling and Mitigating Data Bias for Graph Neural Networks".☆28Jul 8, 2022Updated 3 years ago
- Relation extraction for protein to protein interactions to extraction strongly typed PPI relations.. My research topic.. So work in progr…☆16Nov 28, 2022Updated 3 years ago
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆21Jul 22, 2023Updated 2 years ago
- Algorithms for local community detection in networks☆26Nov 23, 2016Updated 9 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 7 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆42Mar 7, 2025Updated last year
- Inorganic Reaction Prediction☆11Jul 25, 2024Updated last year
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆23Dec 27, 2018Updated 7 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 2 years ago
- NetworkL is a Python package which extends the scope of the NetworkX package to (L)arge time-varying graphs. It supports the manipulation…☆28May 11, 2021Updated 4 years ago
- This repository has moved to: https://github.com/tkipf/c-swm☆27Jan 5, 2020Updated 6 years ago
- Source code for the paper "Dual Contrastive Learning Network for Graph Clustering"☆12Jan 9, 2024Updated 2 years ago
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆19Sep 2, 2025Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A Python library for fast, thread-safe computations on phylogenetic trees☆29Feb 19, 2026Updated last month
- A Molecular cluster tools built on RDKit☆11Dec 22, 2016Updated 9 years ago
- Yet another ROC curve drawer☆22Dec 2, 2025Updated 3 months ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 6 years ago
- ☆10Sep 16, 2021Updated 4 years ago
- Python library to share machine learning models easily and reliably.☆18Nov 5, 2019Updated 6 years ago
- get pcap feature☆10Sep 24, 2018Updated 7 years ago