A collection of Python scripts that implement various graph clustering algorithms, specifically for identifying protein complexes from protein-protein interaction networks.
☆97Nov 7, 2018Updated 7 years ago
Alternatives and similar repositories for python-graph-clustering
Users that are interested in python-graph-clustering are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Attributed graph datasets with ground truth clusters☆12Aug 9, 2022Updated 3 years ago
- Source Code for ICML 2022 paper "Boosting Graph Structure Learning with Dummy Nodes"☆19Apr 24, 2023Updated 3 years ago
- Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.☆12Apr 7, 2017Updated 9 years ago
- Software for error-tolerant coding of information into DNA sequences using finite-state transducers.☆12Jan 8, 2017Updated 9 years ago
- Python Benchmarking Framework for the Clustering Algorithms Evaluation: networks generation and shuffling; failover execution and resourc…☆18Nov 28, 2018Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Biological Graphic tool in Python☆34May 14, 2020Updated 6 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- Dynamic community detection based on network structural perturbation and topological similarity☆12May 12, 2019Updated 7 years ago
- Nilearn tutorials for OHBM 2016 educational course☆13Jul 13, 2016Updated 10 years ago
- ☆25May 23, 2024Updated 2 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- screenlamp is a Python toolkit for hypothesis-driven virtual screening☆24Mar 19, 2018Updated 8 years ago
- The Pytorch implementation of "NCAGC: A Neighborhood Contrast Framework for Attributed Graph Clustering"☆18Jul 28, 2024Updated 2 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆15Dec 18, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A Python implementation of Girvan-Newman algorithm☆142Oct 27, 2023Updated 2 years ago
- Several graph clustering algorithms in one library☆18Oct 27, 2018Updated 7 years ago
- Omega Index for evaluation of overlapping community structure - (Python package available through pip)☆12Dec 29, 2021Updated 4 years ago
- Algorithms for local community detection in networks☆26Nov 23, 2016Updated 9 years ago
- ☆145Feb 26, 2021Updated 5 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Computational method for Comparative ReConstruction of genome-scale metabolic networks☆22Mar 23, 2018Updated 8 years ago
- a Graph database and R package for omic data integration☆19Oct 28, 2016Updated 9 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆43May 28, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Inorganic Reaction Prediction☆11Jul 25, 2024Updated 2 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆23Dec 27, 2018Updated 7 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 2 years ago
- NetworkL is a Python package which extends the scope of the NetworkX package to (L)arge time-varying graphs. It supports the manipulation…☆28May 11, 2021Updated 5 years ago
- This repository has moved to: https://github.com/tkipf/c-swm☆27Jan 5, 2020Updated 6 years ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Updated this week
- This is a sample implementation of "Robust Graph Convolutional Networks Against Adversarial Attacks", KDD 2019.☆10Dec 8, 2020Updated 5 years ago
- A Python library for fast, thread-safe computations on phylogenetic trees☆30Feb 19, 2026Updated 5 months ago
- A Molecular cluster tools built on RDKit☆11Dec 22, 2016Updated 9 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 6 years ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 7 years ago
- 3D reconstruction of a mouse from a collection of Sinograms coming from a Computed Tomography scan, with Filtered Backprojection and Matl…☆15Aug 15, 2021Updated 4 years ago
- get pcap feature☆10Sep 24, 2018Updated 7 years ago
- A PyTorch implementation of SIN.☆12Oct 20, 2021Updated 4 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 11 months ago
- Code for paper https://arxiv.org/abs/2102.13186☆42Apr 3, 2021Updated 5 years ago