GradinaruLab / mCREATE
☆13Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for mCREATE
- The R Bioconductor package for scMAGeCK.☆12Updated 7 months ago
- metadata and data from the database☆38Updated 4 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆34Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆58Updated 4 months ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆27Updated 2 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆41Updated 2 months ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆21Updated 3 years ago
- Geometry-preserving random sampling☆75Updated 3 weeks ago
- epigenome analysis to rank transcription factors☆30Updated last year
- R package for analysing proteomics data☆48Updated last year
- ☆12Updated 3 weeks ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆34Updated 2 years ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆25Updated 3 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆36Updated 5 years ago
- ☆38Updated 11 months ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆26Updated last month
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆42Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆30Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆23Updated 2 years ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated 4 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆23Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 2 years ago
- Analysis for 2019 submission "Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis" Schaffli…☆22Updated 3 years ago
- ACTIONet single-cell analysis framework☆36Updated 2 months ago
- ☆34Updated 6 months ago
- Functional Embedding of Gene Signatures☆36Updated 8 months ago