churchlab / AAV_fitness_landscape
Analysis for "Comprehensive fitness landscape of AAV capsid reveals a viral gene and enables machine-guided design"
☆23Updated 5 years ago
Alternatives and similar repositories for AAV_fitness_landscape:
Users that are interested in AAV_fitness_landscape are comparing it to the libraries listed below
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 2 months ago
- ☆73Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆74Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆45Updated 5 years ago
- Feature map and function annotation of Proteins☆33Updated 10 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆52Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated 3 weeks ago
- Code and Data for Generative modeling for AAV design☆10Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆31Updated last week
- Bioinformatics code for paper associated with deep diversification of AAV☆38Updated 4 months ago
- Mutation effects predicted from sequence co-variation☆64Updated 7 years ago
- Collection of papers related to BCR repertoire analyses☆18Updated 3 years ago
- A visualization software for antibody multi sequence alignment☆18Updated 10 months ago
- The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"☆26Updated 5 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆72Updated this week
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence☆14Updated 4 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆48Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆44Updated 5 years ago
- Models, design algorithms, and other software related to Salis lab publications☆30Updated 5 months ago
- Data Processing, Modeling and Analysis scripts for CRISPR-inDelphi☆13Updated 2 years ago
- Evolutionary velocity with protein language models☆90Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆68Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆168Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆97Updated 7 months ago
- HLA-II ligand predictor.☆43Updated 2 years ago
- ☆82Updated 6 months ago
- Code for 5UTR project☆24Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- Tool for deep mutational scanning experiments.☆49Updated last month
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆84Updated last year