Alternatives and similar repositories for AAV_fitness_landscape:

Users that are interested in AAV_fitness_landscape are comparing it to the libraries listed below

• ntranoslab / esm-variants
  ☆72Updated last year
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆71Updated 10 months ago
• churchlab / Deep_diversification_AAV
  Bioinformatics code for paper associated with deep diversification of AAV
  ☆40Updated 3 months ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆44Updated 5 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated 3 weeks ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆86Updated last year
• OrensteinLab / DeCoDe
  Degenerate Codon Design
  ☆13Updated 5 years ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆167Updated 11 months ago
• churchlab / Generative_AAV_design
  Code and Data for Generative modeling for AAV design
  ☆10Updated last year
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆28Updated 2 years ago
• alchemab / bcr-repertoire-papers
  Collection of papers related to BCR repertoire analyses
  ☆17Updated 3 years ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆48Updated last month
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆50Updated 10 months ago
• a96123155 / UTR-LM
  ☆76Updated 4 months ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 2 years ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆30Updated this week
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆50Updated 2 years ago
• kuixu / PrismNet
  Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
  ☆61Updated 11 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆37Updated this week
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆41Updated last year
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆65Updated last year
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆18Updated 8 months ago
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆28Updated 3 months ago
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆24Updated last year
• Rostlab / ProNA2020
  ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence
  ☆14Updated 4 years ago
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆31Updated 2 years ago
• RTH-tools / crispron
  CRISPR Cas9 ontarget prediction software
  ☆26Updated last month
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆51Updated 4 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆55Updated last month