AssemblyNet: 3D Whole Brain MRI segmentation pipeline
☆71Jun 28, 2023Updated 2 years ago
Alternatives and similar repositories for AssemblyNet
Users that are interested in AssemblyNet are comparing it to the libraries listed below
Sorting:
- BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.☆13Dec 15, 2025Updated 2 months ago
- Peak width of Skeletonized Mean Diffusivity (PSMD)☆15Nov 27, 2025Updated 3 months ago
- A workflow to allow Freesurfer recon-all to run on brain image with gliomas☆32Jun 17, 2024Updated last year
- MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness☆19Feb 25, 2025Updated last year
- BRAinNetome fMRI Toolkit -- MATLAB scripts/GUIs for fMRI data pre-/post-processes☆15Oct 12, 2020Updated 5 years ago
- Automatic BIDS architecture☆15Sep 2, 2024Updated last year
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆348Jan 28, 2026Updated last month
- Synthetic BOLD images for distortion correction of fMRI without additional calibration scans☆32Jul 31, 2025Updated 7 months ago
- A medical image converter☆32Jul 20, 2025Updated 7 months ago
- PyTorch implementation of FastSurferCNN☆583Feb 17, 2026Updated last week
- Matlab implementation of peripheral nerve stimulation (PNS) prediction at Siemens MRI systems based on the SAFE model by Herbank and Gebh…☆27Feb 21, 2026Updated last week
- CHeBA NiL Software with UBO Detector to extract white matter hyperintensities☆10Mar 4, 2020Updated 5 years ago
- Visualize and print volumetric brain data☆13Jun 20, 2024Updated last year
- Quantitative MRI toolbox in Python☆13Dec 19, 2024Updated last year
- Do not use this old repository. Instead, use https://github.com/pnlbwh/luigi-pnlpipe & https://github.com/pnlbwh/pnlNipype☆12Mar 12, 2025Updated 11 months ago
- EEG Prediction Visualizer☆16Oct 10, 2023Updated 2 years ago
- RadTract: enhanced tractometry with radiomics-based imaging biomarkers for improved predictive modelling.☆13Aug 28, 2025Updated 6 months ago
- Matlab for NIFTI support☆10Dec 26, 2018Updated 7 years ago
- Code for "Automated Detection of Alzheimer’s Disease: A Multi-modal Approach With 3D MRI and Amyloid PET" paper☆14Jan 18, 2025Updated last year
- Harmonization of multi-site, multi-shell diffusion MRI☆13Oct 16, 2025Updated 4 months ago
- Deep Whole Brain Segmentation Using SLANT Method☆129Dec 3, 2023Updated 2 years ago
- ☆31Dec 11, 2023Updated 2 years ago
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆47May 19, 2021Updated 4 years ago
- An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images☆53Feb 11, 2026Updated 2 weeks ago
- Python wrapper around MATLAB and SPM12☆10Updated this week
- MRI preprocessing pipeline☆13May 4, 2018Updated 7 years ago
- Deep Learning tools for brain medical images☆142Jul 27, 2024Updated last year
- Fetches PubMed article IDs (PMIDs) from email inbox, then crawls PubMed, Google Scholar and Sci-Hub for respective PDF files.☆35Oct 23, 2018Updated 7 years ago
- MRI brain extraction tool☆397Dec 18, 2024Updated last year
- Preprocessing of arterial spin labeling (ASL) data☆54Feb 20, 2026Updated last week
- MRI console application based on spectrum-instrumentation measurement cards and pulse sequences from pypulseq. Read more in the docs!☆22Feb 20, 2026Updated last week
- WM tract atlases for the human (HCP and UK Biobank) and Macaque brain and connectivity blueprint atlases for the human (HCP) and macaque …☆18Dec 23, 2021Updated 4 years ago
- ☆17Aug 16, 2024Updated last year
- Multi-modality brain-age analysis in the UK Biobank☆12Mar 4, 2020Updated 5 years ago
- Temporal Stability of Modular Brain Network Organization - and its Relationship with Individual Differences (e.g., in General Intelligen…☆12May 18, 2019Updated 6 years ago
- The BRC Pipeline scripts are being released for processing magnetic resonance imaging (MRI) data. This processing pipeline could be appli…☆17Aug 19, 2025Updated 6 months ago
- A radiomics tool with a variety of brain MRI processing functions, including affine registration, hippocampus segmentation and feature ca…☆29Jul 20, 2021Updated 4 years ago
- brainCOLOR project: brain image labeling protocol and optimal colormap designed for brain images☆17Mar 28, 2019Updated 6 years ago
- SPM implementation of https://github.com/JosePMarques/MP2RAGE-related-scripts☆13Feb 18, 2026Updated last week