volBrain / AssemblyNet
AssemblyNet: 3D Whole Brain MRI segmentation pipeline
☆58Updated last year
Alternatives and similar repositories for AssemblyNet:
Users that are interested in AssemblyNet are comparing it to the libraries listed below
- LST-AI - Deep Learning Ensemble for Accurate MS Lesion Segmentation☆32Updated last month
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆98Updated last month
- RadTract: enhanced tractometry with radiomics-based imaging biomarkers for improved predictive modelling.☆11Updated 10 months ago
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆49Updated 2 years ago
- An AI-powered open-source medical image analysis toolbox☆62Updated 8 months ago
- DL+DiReCT - Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation☆26Updated 2 weeks ago
- Pre-trained models and utilities for deep learning on medical images in Python☆215Updated last week
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆72Updated 9 months ago
- ☆28Updated last year
- White matter tractography clustering and more...☆76Updated last month
- Code examples of the free course in Youtube of brain MRI preprocessing techniques in python☆65Updated 3 months ago
- Brain Segmentation with MONAI and Dynamic Unet (nn-unet)☆24Updated 3 months ago
- Framework for the reproducible classification of Alzheimer's disease using machine learning☆41Updated 2 years ago
- a tool to segment the hypothalamus and associated subunits on T1-weighted MRI scans☆26Updated 2 years ago
- Automated deep-learning based brain tumor segmentation on MRI☆30Updated 2 years ago
- Brain Extraction Tool in Python☆40Updated last month
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆34Updated last month
- A space to log issues, updates, and software related to the ATLAS (Anatomical Tracings of Lesions After Stroke) database.☆82Updated 2 years ago
- AICONSlab's white matter hyperintensities (WMH) segmentation algorithm using CNNs☆17Updated 7 months ago
- TF2.3 DCE-/DSC-MRI processing code, collected, tested and made available to all.☆38Updated 2 months ago
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆68Updated this week
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆46Updated 3 years ago
- Multi-site dMRI harmonization☆47Updated this week
- NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.☆147Updated 3 years ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆26Updated this week
- MIRTK based SVR reconstruction☆50Updated 3 weeks ago
- Perivascular (PVS) or Virchow–Robin Spaces (VRS) segmentation with a 3D Unet☆27Updated 6 months ago
- Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …☆35Updated 3 years ago
- A project to provide custom sorting and renaming of dicom files☆78Updated 9 months ago
- Multi-modal Image Registration And Connectivity anaLysis☆43Updated last week