ajasja / calculate_dihedralsLinks
A VMD script to calculate side-chain and backbone dihedrals (torsion angles)
☆14Updated 9 years ago
Alternatives and similar repositories for calculate_dihedrals
Users that are interested in calculate_dihedrals are comparing it to the libraries listed below
Sorting:
- Pymol ScrIpt COllection (PSICO)☆60Updated last week
- Dynamics PyMOL Plugin☆44Updated last year
- An open-source library for the analysis of protein interactions.☆29Updated 3 years ago
- The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…☆80Updated last year
- MM-PBSA method for GROMACS. For full description, please visit homepage:☆67Updated 2 months ago
- An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM☆18Updated 3 months ago
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆45Updated last year
- Python implementation of the Ramachandran plot☆51Updated last month
- Framework for the rapid modeling glycans and glycoproteins.☆30Updated last year
- Material from papers from KULL centre☆69Updated last year
- Analysis of contacts in molecular dynamics trajectories☆43Updated 5 years ago
- RosettaDesign using PyRosetta☆32Updated 6 years ago
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆36Updated 2 months ago
- This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universit…☆80Updated 4 months ago
- Contact map analysis for biomolecules; based on MDTraj☆46Updated 8 months ago
- Set of useful HADDOCK utility scripts☆53Updated 11 months ago
- Structure-informed machine learning for kinase modeling☆57Updated this week
- Calculation of interatomic interactions in molecular structures☆77Updated 3 years ago
- A simple Python library to generate model peptides☆87Updated 4 years ago
- A repository of compound-target annotations in support of Systematic Chemogenetic Library Assembly☆17Updated 5 years ago
- Python interface for the RCSB PDB search API.☆63Updated 4 months ago
- Tutorials and examples for nicer animations (movies) and images in PyMOL.☆21Updated 10 years ago
- analyse PDB files, run molecular-dynamics & analyse trajectories☆61Updated 7 years ago
- To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.☆26Updated 4 months ago
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆72Updated 4 months ago
- This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.☆28Updated 4 years ago
- Calculation of interatomic interactions in molecular structures☆105Updated 11 months ago
- The code for the QuickVina homepage.☆33Updated 2 years ago
- Software for biomolecular electrostatics and solvation calculations☆106Updated 11 months ago
- (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆70Updated 2 years ago