ajasja / calculate_dihedralsLinks
A VMD script to calculate side-chain and backbone dihedrals (torsion angles)
☆14Updated 9 years ago
Alternatives and similar repositories for calculate_dihedrals
Users that are interested in calculate_dihedrals are comparing it to the libraries listed below
Sorting:
- An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM☆19Updated 6 months ago
- Dynamics PyMOL Plugin☆45Updated last year
- Pymol ScrIpt COllection (PSICO)☆63Updated 3 months ago
- MM-PBSA method for GROMACS. For full description, please visit homepage:☆68Updated 5 months ago
- Python Tools for NAMD☆22Updated 6 months ago
- An open-source library for the analysis of protein interactions.☆32Updated 3 years ago
- An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM☆37Updated 5 months ago
- Framework for the rapid modeling glycans and glycoproteins.☆31Updated 2 years ago
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆76Updated 7 months ago
- Contact map analysis for biomolecules; based on MDTraj☆46Updated 11 months ago
- The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websear…☆84Updated 2 months ago
- This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.☆28Updated 5 years ago
- This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universit…☆86Updated this week
- The code for the QuickVina homepage.☆35Updated 3 years ago
- Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.☆29Updated 3 years ago
- (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆74Updated 2 years ago
- Gromacs_py is a python library allowing a simplified use of the gromacs MD simulation software. Gromacs_py can build topologie based on a…☆49Updated 3 years ago
- Tutorials and examples for nicer animations (movies) and images in PyMOL.☆21Updated 10 years ago
- PCA and normal mode analysis of proteins☆18Updated last year
- Analysis of contacts in molecular dynamics trajectories☆44Updated 6 years ago
- Set of useful HADDOCK utility scripts☆55Updated 2 months ago
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆46Updated last year
- analyse PDB files, run molecular-dynamics & analyse trajectories☆62Updated 7 years ago
- A simple Python library to generate model peptides☆88Updated 4 years ago
- RosettaDesign using PyRosetta☆33Updated 6 years ago
- Analysis of non-covalent interactions in MD trajectories☆64Updated 10 months ago
- Material from papers from KULL centre☆71Updated last year
- A package for MD, Docking and Machine learning drug discovery pipeline☆44Updated 5 years ago
- molecular dynamics simulation and analysis. 分子动力学模拟和分析。☆41Updated 6 years ago
- Structure-informed machine learning for kinase modeling☆58Updated this week