zsteve / pcurvepyLinks
Principal curves implementation (Hastie '89) in Python
☆18Updated 5 years ago
Alternatives and similar repositories for pcurvepy
Users that are interested in pcurvepy are comparing it to the libraries listed below
Sorting:
- Software tool for metabolic modelling in Systems Biology☆10Updated 4 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…☆20Updated 2 years ago
- PyTorch implementation of the paper "Neural Decomposition: Functional ANOVA with Variational Autoencoders"☆25Updated 4 years ago
- Systematically learn and evaluate manifolds from high-dimensional data☆98Updated last year
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆17Updated last year
- Differentiable Euler Characteristic Transform☆17Updated 11 months ago
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆30Updated 2 years ago
- Simple Principal Curves in Python☆33Updated 3 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- Easy visualization and evaluation of matrix and tensor factorization models☆16Updated 2 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆26Updated 2 years ago
- density-based clustering for exploratory data analysis based on multi-parameter persistence☆38Updated 2 months ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆21Updated 3 months ago
- Single-cell multi-omics integration using Optimal Transport☆44Updated 9 months ago
- Latent spaces for single cells☆21Updated last year
- Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings☆36Updated 6 months ago
- Matlab implementation of the Elastic Principal Graphs (ElPiGraph) method☆14Updated 2 years ago
- ☆16Updated last year
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 2 years ago
- ☆11Updated 2 weeks ago
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Updated 4 years ago
- ☆11Updated 7 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated 2 years ago
- Branching Gaussian process☆30Updated 2 years ago
- Fast Laplacian Eigenmaps: lightweight multicore LE for non-linear dimensional reduction with minimal memory usage. Outperforms sklearn's …☆23Updated 3 years ago
- Multiscale earth mover's distance methods for tree and manifold structured data☆11Updated 3 months ago
- All code necessary for reconstructing Bonsai-trees on high-dimensional data and visualizing them in Bonsai-scout☆76Updated this week
- Dynamic inference from single-cell snapshots by optimal transport☆19Updated last year
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆21Updated 2 months ago