A fast, programmable molecular viewer for research, scripting, and the web
☆198Aug 13, 2026Updated last week
Alternatives and similar repositories for patinae
Users that are interested in patinae are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Terminal protein structure viewer — interactive 3D visualization of PDB/mmCIF structures with cartoon ribbons, braille rendering, and Six…☆304Jul 30, 2026Updated 3 weeks ago
- ☆149May 18, 2026Updated 3 months ago
- Conditionally Site-Independent Neural Evolution of Antibody Sequences (ICML '26)☆24May 9, 2026Updated 3 months ago
- ☆15May 18, 2026Updated 3 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆213Jul 10, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Send data to and from pymol from a remote server (e.g. a cluster running deep learning workflows)☆38Feb 17, 2025Updated last year
- protein folding app running on modal☆39May 30, 2026Updated 2 months ago
- Toolkit for alphafold3 input and output files☆106Jul 31, 2026Updated 3 weeks ago
- A drop-in replacement for Rosetta Relax☆30Jan 30, 2026Updated 6 months ago
- A generalized computational framework for biomolecular modeling.☆443Updated this week
- An Open-source Drug Discovery Engine☆420Aug 16, 2026Updated last week
- AlphaFast: ultra-high-throughput AlphaFold3 inference with MMSeqs2-GPU☆166May 4, 2026Updated 3 months ago
- ☆99Updated this week
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆43Mar 22, 2026Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Local Interaction Score (LIS) for structure prediction analysis☆85Jul 28, 2026Updated 3 weeks ago
- Code for the DISCO model: General Multimodal Protein Design Enables DNA-Encoding of Chemistry☆213May 13, 2026Updated 3 months ago
- ☆83Jun 10, 2026Updated 2 months ago
- Official repository of PXDesign☆250Dec 31, 2025Updated 7 months ago
- ☆30Apr 30, 2026Updated 3 months ago
- ChatMol☆364Mar 16, 2026Updated 5 months ago
- SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins☆86Jun 1, 2026Updated 2 months ago
- Potts model-based protein sequence design☆110Jul 1, 2026Updated last month
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆307Sep 23, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- bioinformatics tools running on modal☆161Jun 3, 2026Updated 2 months ago
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆417Aug 4, 2026Updated 2 weeks ago
- PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.☆174Apr 26, 2026Updated 3 months ago
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆2,032Aug 1, 2026Updated 3 weeks ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆149Nov 11, 2025Updated 9 months ago
- It's a package for evaluation of predicted poses, right?☆78Jul 13, 2026Updated last month
- Multiple Protein Structure Alignment at Scale with FoldMason☆280May 11, 2026Updated 3 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆258Jan 3, 2026Updated 7 months ago
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆94Jul 10, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Genie 3 is a fast, all-atom SE(3)-equivariant diffusion model for protein design. It achieves state-of-the-art performance on uncondition…☆127May 10, 2026Updated 3 months ago
- Schrödinger Sketcher☆40Updated this week
- A fully open source biomolecular structure prediction model based on AlphaFold3☆832Updated this week
- Machine‑Learning / Molecular‑Mechanics (ML/MM) hybrid calculator and CLI toolset for Mechanistic Investigation of Enzymatic Reactions.☆19Updated this week
- This repository enables inference and sampling for Dyno Psi-1, a de novo miniprotein binder design model.☆24Mar 24, 2026Updated 5 months ago
- SO3krates and Universal Pairwise Force Field for Molecular Simulation☆228Apr 17, 2026Updated 4 months ago
- Metal and Water prediction☆16Feb 5, 2025Updated last year