A fast, programmable molecular viewer for research, scripting, and the web
☆202Sep 12, 2026Updated this week
Alternatives and similar repositories for patinae
Users that are interested in patinae are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆153May 18, 2026Updated 3 months ago
- Terminal protein structure viewer — interactive 3D visualization of PDB/mmCIF structures with cartoon ribbons, braille rendering, and Six…☆309Jul 30, 2026Updated last month
- Conditionally Site-Independent Neural Evolution of Antibody Sequences (ICML '26)☆24Aug 30, 2026Updated last week
- ☆17May 18, 2026Updated 3 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆215Jul 10, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Send data to and from pymol from a remote server (e.g. a cluster running deep learning workflows)☆38Feb 17, 2025Updated last year
- protein folding app running on modal☆39May 30, 2026Updated 3 months ago
- Toolkit for alphafold3 input and output files☆107Sep 1, 2026Updated last week
- A drop-in replacement for Rosetta Relax☆30Jan 30, 2026Updated 7 months ago
- A generalized computational framework for biomolecular modeling.☆446Aug 20, 2026Updated 3 weeks ago
- An Open-source Drug Discovery Engine☆468Sep 2, 2026Updated last week
- AlphaFast: ultra-high-throughput AlphaFold3 inference with MMSeqs2-GPU☆167May 4, 2026Updated 4 months ago
- ☆101Updated this week
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆44Mar 22, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Potts model-based protein sequence design☆114Jul 1, 2026Updated 2 months ago
- Local Interaction Score (LIS) for structure prediction analysis☆85Jul 28, 2026Updated last month
- Code for the DISCO model: General Multimodal Protein Design Enables DNA-Encoding of Chemistry☆216May 13, 2026Updated 3 months ago
- ☆84Jun 10, 2026Updated 3 months ago
- Official repository of PXDesign☆256Dec 31, 2025Updated 8 months ago
- ☆30Apr 30, 2026Updated 4 months ago
- ChatMol☆367Mar 16, 2026Updated 5 months ago
- SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins☆91Jun 1, 2026Updated 3 months ago
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆309Sep 23, 2025Updated 11 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- bioinformatics tools running on modal☆161Jun 3, 2026Updated 3 months ago
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆424Sep 4, 2026Updated last week
- PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.☆175Apr 26, 2026Updated 4 months ago
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆2,053Aug 1, 2026Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆150Nov 11, 2025Updated 10 months ago
- It's a package for evaluation of predicted poses, right?☆78Jul 13, 2026Updated 2 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆281May 11, 2026Updated 4 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆267Jan 3, 2026Updated 8 months ago
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆95Jul 10, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Schrödinger Sketcher☆40Updated this week
- Genie 3 is a fast, all-atom SE(3)-equivariant diffusion model for protein design. It achieves state-of-the-art performance on uncondition…☆133May 10, 2026Updated 4 months ago
- A fully open source biomolecular structure prediction model based on AlphaFold3☆861Updated this week
- Machine‑Learning / Molecular‑Mechanics (ML/MM) hybrid calculator and CLI toolset for Mechanistic Investigation of Enzymatic Reactions.☆23Updated this week
- This repository enables inference and sampling for Dyno Psi-1, a de novo miniprotein binder design model.☆24Aug 25, 2026Updated 2 weeks ago
- SO3krates and Universal Pairwise Force Field for Molecular Simulation☆231Apr 17, 2026Updated 4 months ago
- Metal and Water prediction☆16Feb 5, 2025Updated last year