A fast, programmable molecular viewer for research, scripting, and the web
☆187Jul 13, 2026Updated this week
Alternatives and similar repositories for patinae
Users that are interested in patinae are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Terminal protein structure viewer — interactive 3D visualization of PDB/mmCIF structures with cartoon ribbons, braille rendering, and Six…☆286Apr 30, 2026Updated 2 months ago
- Conditionally Site-Independent Neural Evolution of Antibody Sequences (ICML '26)☆24May 9, 2026Updated 2 months ago
- Toolkit for alphafold3 input and output files☆104Updated this week
- An Open-source Drug Discovery Engine☆311Updated this week
- Code for the DISCO model: General Multimodal Protein Design Enables DNA-Encoding of Chemistry☆207May 13, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins☆80Jun 1, 2026Updated last month
- ☆77Jun 10, 2026Updated last month
- Protein representation and design under a single training scheme☆24May 17, 2026Updated last month
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆391May 22, 2026Updated last month
- ☆143May 18, 2026Updated last month
- bioinformatics tools running on modal☆159Jun 3, 2026Updated last month
- PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.☆173Apr 26, 2026Updated 2 months ago
- Genie 3 is a fast, all-atom SE(3)-equivariant diffusion model for protein design. It achieves state-of-the-art performance on uncondition…☆119May 10, 2026Updated 2 months ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆55Jul 22, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Metal and Water prediction☆14Feb 5, 2025Updated last year
- ☆53Jul 2, 2026Updated last week
- [ICLR'26] Towards All-Atom Foundation Models for Biomolecular Binding Affinity Prediction☆20Updated this week
- 10k protein structures, no time limit, best val loss wins☆60Updated this week
- A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…☆81Jun 30, 2026Updated 2 weeks ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆281May 11, 2026Updated 2 months ago
- A dependency-free cross-platform swiss army knife for PDB files.☆456Jun 10, 2026Updated last month
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆95Apr 10, 2026Updated 3 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Biomolecular design by sampling from generative models☆51Updated this week
- Rapid generation of high-quality structure figures for publication with PyMOL-PUB☆94Oct 30, 2024Updated last year
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆402Updated this week
- ☆604Feb 6, 2025Updated last year
- A model-context-protocol server for molecules.☆96Apr 20, 2025Updated last year
- Official implementation of RuSH (Scaffold Hopping with Generative Reinforcement Learning). Includes ScaffoldFinder algorithm for 2D decor…☆23Feb 20, 2025Updated last year
- ☆79Dec 15, 2025Updated 6 months ago
- Spatiotemporal identification of druggable binding sites using deep learning☆22Mar 16, 2021Updated 5 years ago
- ☆92Sep 25, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Diffusion-based all-atom protein generative model.