nipy / mindboggleLinks
Automated anatomical brain label/shape analysis software (+ website)
☆154Updated 4 years ago
Alternatives and similar repositories for mindboggle
Users that are interested in mindboggle are comparing it to the libraries listed below
Sorting:
- A framework for developing neural network models for 3D image processing.☆167Updated 3 weeks ago
- Curated list of open-access databases with human structural MRI data☆129Updated 6 years ago
- Using ANTs to process multiple MR image types for a single subject☆26Updated 8 years ago
- Multiple Automatically Generated Templates brain segmentation algorithm☆50Updated last year
- Preprocessing scripts for neuro imaging☆110Updated 2 years ago
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆20Updated 4 years ago
- Configurable Pipeline for the Analysis of Connectomes☆77Updated last month
- Cortical neuroimaging visualization in Python☆250Updated 2 years ago
- Guide to tutorial materials for ANTs/R☆47Updated 7 years ago
- Neuroimaging widgets for jupyter notebooks☆87Updated 3 years ago
- Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis☆31Updated 5 months ago
- DICOM to Nifti conversion with meta data preservation☆77Updated last year
- A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.☆49Updated 12 years ago
- PipeDream - open source neuroimaging pipelines☆17Updated 6 years ago
- Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940☆16Updated 7 years ago
- defacing utility for MRI images☆131Updated last year
- Version 2 of the minc-toolkit, uses tools based on ITK version 4.x☆53Updated 7 months ago
- Neuroimaging in Python FMRI analysis package☆406Updated last year
- Metaproject uniting all the available minc tools☆40Updated 2 years ago
- VISTASOFT is the main software repository of the VISTA lab at Stanford University.☆152Updated last week
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆107Updated last week
- A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!☆100Updated 9 months ago
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆73Updated 2 months ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆159Updated last week
- ☆19Updated 9 years ago
- 3D MRI data exploration and segmentation tool.☆77Updated 2 years ago
- MindControl is an app for quality control of neuroimaging pipeline outputs. Demo:☆54Updated 6 years ago
- MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …☆332Updated last week
- A Tractography Tool for Diffusion MRI☆151Updated 3 weeks ago
- The original Fibernavigator: tool for vizualization of DTI and MRI data☆37Updated 6 years ago