nipy / mindboggle
Automated anatomical brain label/shape analysis software (+ website)
☆147Updated 3 years ago
Alternatives and similar repositories for mindboggle:
Users that are interested in mindboggle are comparing it to the libraries listed below
- defacing utility for MRI images☆117Updated last year
- Cortical neuroimaging visualization in Python☆244Updated last year
- Curated list of open-access databases with human structural MRI data☆127Updated 5 years ago
- Multiple Automatically Generated Templates brain segmentation algorithm☆48Updated 8 months ago
- Using ANTs to process multiple MR image types for a single subject☆24Updated 7 years ago
- Neuroimaging widgets for jupyter notebooks☆85Updated 2 years ago
- Preprocessing scripts for neuro imaging☆106Updated last year
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆91Updated this week
- A framework for developing neural network models for 3D image processing.☆159Updated 2 weeks ago
- Configurable Pipeline for the Analysis of Connectomes☆66Updated this week
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆66Updated last year
- Guide to tutorial materials for ANTs/R☆46Updated 6 years ago
- DICOM to Nifti conversion with meta data preservation☆74Updated 2 months ago
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆20Updated 4 years ago
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆45Updated 3 years ago
- Version 2 of the minc-toolkit, uses tools based on ITK version 4.x☆53Updated 3 months ago
- 3D MRI data exploration and segmentation tool.☆74Updated last year
- Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.☆21Updated 8 months ago
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆137Updated last week
- For calculating exact geodesic distances on cortical surface meshes☆53Updated 6 months ago
- MindControl is an app for quality control of neuroimaging pipeline outputs. Demo:☆54Updated 5 years ago
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆73Updated 8 months ago
- A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!☆92Updated 2 years ago
- Stand alone fMRI software suite for layer-fMRI analyses.☆91Updated this week
- Flexible DICOM conversion into structured directory layouts☆246Updated last week
- A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.☆43Updated 11 years ago
- VISTASOFT is the main software repository of the VISTA lab at Stanford University.☆149Updated 2 months ago
- Processing tools for high-resolution neuroimaging☆71Updated 3 months ago
- Automated Fiber Quantification☆76Updated 11 months ago
- BROCCOLI: Software for Fast fMRI Analysis on Many-Core CPUs and GPUs☆117Updated 4 years ago