Alternatives and similar repositories for mindboggle

Users that are interested in mindboggle are comparing it to the libraries listed below

• poldracklab / pydeface
  defacing utility for MRI images
  ☆121Updated last year
• cMadan / openMorph
  Curated list of open-access databases with human structural MRI data
  ☆128Updated 6 years ago
• CoBrALab / MAGeTbrain
  Multiple Automatically Generated Templates brain segmentation algorithm
  ☆49Updated 11 months ago
• FCP-INDI / C-PAC
  Configurable Pipeline for the Analysis of Connectomes
  ☆67Updated this week
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆92Updated 2 weeks ago
• nipy / niwidgets
  Neuroimaging widgets for jupyter notebooks
  ☆86Updated 2 years ago
• neuronets / nobrainer
  A framework for developing neural network models for 3D image processing.
  ☆163Updated 2 months ago
• moloney / dcmstack
  DICOM to Nifti conversion with meta data preservation
  ☆75Updated 6 months ago
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆96Updated last week
• neurospin / pypreprocess
  Preprocessing scripts for neuro imaging
  ☆109Updated last year
• NeuroanatomyAndConnectivity / surfdist
  For calculating exact geodesic distances on cortical surface meshes
  ☆53Updated 9 months ago
• raamana / visualqc
  VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
  ☆73Updated 11 months ago
• johncolby / along-tract-stats
  A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.
  ☆44Updated 12 years ago
• TJKlein / DeepNAT
  ☆19Updated 8 years ago
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆140Updated this week
• jeffduda / NeuroBattery
  Using ANTs to process multiple MR image types for a single subject
  ☆25Updated 7 years ago
• BIC-MNI / minc-toolkit-v2
  Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
  ☆53Updated last week
• nipy / heudiconv
  Flexible DICOM conversion into structured directory layouts
  ☆256Updated 3 weeks ago
• stnava / ANTsTutorial
  Guide to tutorial materials for ANTs/R
  ☆46Updated 6 years ago
• vistalab / vistasoft
  VISTASOFT is the main software repository of the VISTA lab at Stanford University.
  ☆150Updated 5 months ago
• SlicerDMRI / SlicerDMRI
  Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
  ☆80Updated 3 months ago
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆154Updated last month
• nipy / PySurfer
  Cortical neuroimaging visualization in Python
  ☆247Updated last year
• ofgulban / segmentator
  3D MRI data exploration and segmentation tool.
  ☆75Updated last year
• Conxz / multiBrain
  A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!
  ☆92Updated 2 months ago
• akeshavan / mindcontrol
  MindControl is an app for quality control of neuroimaging pipeline outputs. Demo:
  ☆54Updated 6 years ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆66Updated last year
• daducci / AMICO
  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
  ☆109Updated 4 months ago
• Deep-MI / BrainPrint-legacy
  Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)
  ☆20Updated 4 years ago
• demianw / tract_querier
  Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis
  ☆29Updated last week