Automated anatomical brain label/shape analysis software (+ website)
☆154Apr 8, 2021Updated 5 years ago
Alternatives and similar repositories for mindboggle
Users that are interested in mindboggle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- brainCOLOR project: brain image labeling protocol and optimal colormap designed for brain images☆18Mar 28, 2019Updated 7 years ago
- Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)☆21Feb 3, 2021Updated 5 years ago
- A python implementation to extract Shape DNA [1] of triangle surface meshes☆19Jan 23, 2018Updated 8 years ago
- PipeDream - open source neuroimaging pipelines☆17Aug 29, 2019Updated 6 years ago
- Neuroimaging widgets for jupyter notebooks☆87Dec 8, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- brain image comparison and visualization methods for python!☆18Apr 18, 2018Updated 8 years ago
- Neuroimaging analysis and visualization suite☆834Updated this week
- FSL-R Interface package☆45Updated this week
- CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.☆80May 6, 2026Updated 2 weeks ago
- Using ANTs to process multiple MR image types for a single subject☆26Oct 9, 2017Updated 8 years ago
- Workflows and interfaces for neuroimaging packages☆825Updated this week
- Python package to access a cacophony of neuro-imaging file formats☆774Updated this week
- A reimplementation of MAGeTbrain using only ANTs tools.☆17Jan 5, 2023Updated 3 years ago
- Medical image analysis framework merging ANTsR and deep learning☆68Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Pycortex is a python-based toolkit for surface visualization of fMRI data☆658May 12, 2026Updated last week
- Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data☆24May 12, 2025Updated last year
- MindControl is an app for quality control of neuroimaging pipeline outputs. Demo:☆54Apr 26, 2019Updated 7 years ago
- Advanced Normalization Tools (ANTs)☆1,463Updated this week
- A collection of tools for analyzing electrocorticography data☆19Oct 6, 2017Updated 8 years ago
- Tools for spatial and temporal autocorrelation☆27Apr 24, 2023Updated 3 years ago
- Slice:Drop is a web-based, interactive viewer for medical imaging data.☆116Jun 9, 2025Updated 11 months ago
- MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness☆20Feb 25, 2025Updated last year
- Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.☆23May 19, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A set of general tools.☆17Mar 28, 2026Updated last month
- Web based Image Viewer developed @ Center for Advanced Imaging [University of Queensland]☆19May 18, 2023Updated 3 years ago
- Lessons on neuroimaging analysis with Python☆22Jun 20, 2017Updated 8 years ago
- a tool to segment the hypothalamus and associated subunits on T1-weighted MRI scans☆27Jan 6, 2023Updated 3 years ago
- A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.☆866May 12, 2026Updated last week
- DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, mach…☆820Updated this week
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆360Jan 28, 2026Updated 3 months ago
- Combined Spectral Descriptors and LMNN for non-rigid 3D shape retrieval☆18Dec 21, 2016Updated 9 years ago
- Cortical neuroimaging visualization in Python☆253Dec 15, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Multiple Automatically Generated Templates brain segmentation algorithm☆50Jun 18, 2024Updated last year
- Not-yet-official git/annex FreeSurfer repository (https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/repo/freesurfer.git) + debian-sl…☆10May 30, 2017Updated 8 years ago
- Connectome visualization utility☆50May 5, 2016Updated 10 years ago
- GNU Octave library for connectivity analysis in large fMRI datasets☆30Oct 11, 2022Updated 3 years ago
- Quickshear Defacing for Neuroimages☆15May 16, 2023Updated 3 years ago
- Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)☆38Apr 4, 2026Updated last month
- ☆19Dec 28, 2016Updated 9 years ago