Alternatives and similar repositories for Clinical:

Users that are interested in Clinical are comparing it to the libraries listed below

• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆71Updated 2 months ago
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆47Updated 2 months ago
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆77Updated last year
• rpomponio / neuroHarmonize
  Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variabl…
  ☆89Updated this week
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆51Updated this week
• braincharter / vasculature
  Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space
  ☆49Updated 2 years ago
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆65Updated 3 weeks ago
• hufsaim / pvsseg
  perivascular space segmentation
  ☆14Updated 2 years ago
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆63Updated 3 months ago
• thalamicseg / thomas_new
  Segmentation of the thalamus into 11 nuclei and MTT using white-matter-nulled MPRAGE MRI image contrast with support now for standard MPR…
  ☆23Updated 2 weeks ago
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆47Updated 7 months ago
• npnl / PALS
  Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis a…
  ☆23Updated 3 months ago
• CCI-Bonn / HD-BET
  Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …
  ☆34Updated 3 years ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆62Updated this week
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆104Updated 3 months ago
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆95Updated 6 months ago
• CompImg / LST-AI
  LST-AI - Deep Learning Ensemble for Accurate MS Lesion Segmentation
  ☆29Updated 2 months ago
• mezera / mrQ
  mrQ_BoxJoinBox
  ☆22Updated last year
• pBFSLab / FastCSR
  ☆27Updated last year
• EhsanTadayon / choroid-plexus-segmentation
  Segmentation of Choroid Plexus using Gaussian Mixture Model
  ☆13Updated 2 years ago
• Entodi / MeshNet
  Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940
  ☆16Updated 6 years ago
• dama-lab / mouse-brain-atlas
  Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo
  ☆22Updated last year
• KUL-Radneuron / KUL_VBG
  A workflow to allow Freesurfer recon-all to run on brain image with gliomas
  ☆29Updated 8 months ago
• Haoyulance / WPSS
  Weakly supervised perivascular spaces segmentation with salient guidance of Frangi filter
  ☆12Updated last year
• pBFSLab / DeepPrep
  DeepPrep: An accelerated, scalable, and robust pipeline for neuroimaging preprocessing empowered by deep learning
  ☆58Updated last month
• gbarisano / alps
  Bash script to compute DTI-ALPS
  ☆44Updated 2 weeks ago
• BIC-MNI / minc-toolkit-v2
  Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
  ☆53Updated 3 months ago
• NYU-DiffusionMRI / DESIGNER-v1
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
  ☆51Updated last year
• dmritrekker / trekker
  dMRI based fiber tracking using parallel transport tractography
  ☆25Updated last week
• volBrain / AssemblyNet
  AssemblyNet: 3D Whole Brain MRI segmentation pipeline
  ☆58Updated last year