MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness
☆19Feb 25, 2025Updated last year
Alternatives and similar repositories for csg_mri_pipelines
Users that are interested in csg_mri_pipelines are comparing it to the libraries listed below
Sorting:
- Matlab for NIFTI support☆10Dec 26, 2018Updated 7 years ago
- MRI preprocessing pipeline☆13May 4, 2018Updated 7 years ago
- BIPs☆28Dec 26, 2017Updated 8 years ago
- NeMo brain tractograms tool☆12Dec 14, 2020Updated 5 years ago
- WM tract atlases for the human (HCP and UK Biobank) and Macaque brain and connectivity blueprint atlases for the human (HCP) and macaque …☆18Dec 23, 2021Updated 4 years ago
- Peak width of Skeletonized Mean Diffusivity (PSMD)☆15Nov 27, 2025Updated 3 months ago
- SPM Cluster Size Threshold estimation☆13Feb 6, 2023Updated 3 years ago
- ☆17Dec 14, 2025Updated 2 months ago
- Displays regional stats on Freesurfer surfaces in MATLAB☆16Sep 18, 2020Updated 5 years ago
- A set of tools for processing Quantitative MR Images☆63Jul 14, 2025Updated 7 months ago
- A reimplementation of MAGeTbrain using only ANTs tools.☆17Jan 5, 2023Updated 3 years ago
- A few routines to perform "auto reorient" in SPM☆17Jan 11, 2023Updated 3 years ago
- BRAinNetome fMRI Toolkit -- MATLAB scripts/GUIs for fMRI data pre-/post-processes☆15Oct 12, 2020Updated 5 years ago
- Tidies up the reports generated by the Zotero reference manager☆23Nov 2, 2019Updated 6 years ago
- VB17 Sequence Protocols. A collection of pdfs of sequence protocols that where used in my publications. Mostly VASO, Multi-echo, SMS, 3D-…☆20Feb 24, 2026Updated last week
- PCA Model for Brain Extraction☆18Jan 2, 2019Updated 7 years ago
- Tools for spatial and temporal autocorrelation☆27Apr 24, 2023Updated 2 years ago
- A Visualization Toolbox for Brain Connectivity Research☆11Aug 26, 2018Updated 7 years ago
- Fast 3D/4D Phase Unwrapping (julia source code)☆21Jan 12, 2026Updated last month
- Genome-scale metabolic model of Methylococcus capsulatus.☆12Apr 12, 2019Updated 6 years ago
- Some tools for the extraction and plot of second-level ROI-to-ROI results from CONN Toolbox☆29Feb 16, 2017Updated 9 years ago
- Automatic Analysis (aa)☆74Nov 8, 2024Updated last year
- PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface☆17May 22, 2024Updated last year
- This does everything that I need. Layering, smoothing-within layers, layer-connectivity, RF-coil,combination, 2D-dridding of layers and c…☆23Jan 16, 2026Updated last month
- AssemblyNet: 3D Whole Brain MRI segmentation pipeline☆71Jun 28, 2023Updated 2 years ago
- ☆31Dec 11, 2023Updated 2 years ago
- Connectome Mapper☆39Jan 5, 2022Updated 4 years ago
- improved susceptibility weighted imaging using multi-echo aquisitions☆29May 15, 2025Updated 9 months ago
- GNU Octave library for connectivity analysis in large fMRI datasets☆30Oct 11, 2022Updated 3 years ago
- NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations☆33Jul 27, 2020Updated 5 years ago
- MALPEM whole-brain segmentation framework☆27Feb 7, 2024Updated 2 years ago
- Specialized tools for MRI☆26Jan 8, 2026Updated 2 months ago
- multi atlas transfer tools for neuroimaging (maTT)☆68Nov 18, 2024Updated last year
- Gibsonify — Collect nutritional data using Gibson's method!☆11Oct 28, 2023Updated 2 years ago
- Synthetic BOLD images for distortion correction of fMRI without additional calibration scans☆32Jul 31, 2025Updated 7 months ago
- List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data☆74May 19, 2023Updated 2 years ago
- Tools for analysis of brain imaging-derived networks, based on NetworkX☆42Jan 27, 2019Updated 7 years ago
- a pure JS Flash player for web based on swf2js and ruffle engines.☆39Aug 17, 2025Updated 6 months ago
- Toolbox for segmentation and characterisation of transient connectivity☆233Feb 10, 2025Updated last year