vianamp / MitoGraph

Related projects: ⓘ

• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆27Updated 3 years ago
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆19Updated 4 years ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆27Updated last week
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆59Updated 2 weeks ago
• MSSRSupport / MSSR
  MSSR Plugin
  ☆9Updated 2 years ago
• rosalindfranklininstitute / RedLionfish
  ☆28Updated 5 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆77Updated this week
• AndrewGYork / high_na_single_objective_lightsheet
  Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…
  ☆22Updated 2 months ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆34Updated 3 weeks ago
• bigdataprocessor / bigdataprocessor2
  ☆20Updated 6 months ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆17Updated last year
• UU-cellbiology / DoM_Utrecht
  Detection of Molecules plugin for ImageJ, Utrecht University
  ☆14Updated last year
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆45Updated 6 months ago
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆21Updated 3 years ago
• Kapoorlabs-CAPED / NapaTrackMater
  Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.
  ☆16Updated last week
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆63Updated 2 years ago
• imaris / ImarisWriter
  ☆29Updated 4 months ago
• haesleinhuepf / devbio-napari
  ☆42Updated 3 weeks ago
• morphometrics / morphometrics
  ☆19Updated last year
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆14Updated 2 weeks ago
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆62Updated last year
• haesleinhuepf / imagejmacromarkdown
  Generate markdown notebooks from ImageJ Macro
  ☆23Updated 3 years ago
• flevet / SR-Tesseler
  ☆12Updated 4 years ago
• dwaithe / ONBI_image_analysis
  This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course
  ☆16Updated 6 years ago
• ZEISS / czicompress
  Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents
  ☆15Updated this week
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆44Updated 3 years ago
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆21Updated 4 months ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆47Updated 4 months ago
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆19Updated 2 weeks ago