Alternatives and similar repositories for MitoGraph:

Users that are interested in MitoGraph are comparing it to the libraries listed below

• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆31Updated 3 years ago
• COBA-NIH / MicroscopyForBeginnersReferenceGuide
  A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
  ☆25Updated 2 weeks ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆59Updated 2 years ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆82Updated last week
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 7 months ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆18Updated last year
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆43Updated last week
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆63Updated 2 weeks ago
• AndrewGYork / high_na_single_objective_lightsheet
  Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…
  ☆22Updated 9 months ago
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆24Updated 4 years ago
• bigdataprocessor / bigdataprocessor2
  ☆20Updated last month
• imaris / ImarisWriter
  ☆34Updated 10 months ago
• BiAPoL / imagej-macro-cheat-sheet
  ☆19Updated 3 years ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated last week
• haesleinhuepf / devbio-napari
  ☆47Updated 5 months ago
• haesleinhuepf / napari-plot-profile
  ☆17Updated 2 years ago
• haesleinhuepf / imagejmacromarkdown
  Generate markdown notebooks from ImageJ Macro
  ☆24Updated 4 years ago
• ZEISS / czicompress
  Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents
  ☆20Updated this week
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆62Updated last year
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• morphometrics / morphometrics
  ☆20Updated last year
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆59Updated 2 weeks ago
• pymmcore-plus / useq-schema
  An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.
  ☆17Updated this week
• grishkam / QuickFigures
  QuickFigures is a toolset for creating scientific figures see publication for details
  ☆35Updated last year
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆54Updated this week
• UU-cellbiology / ComDet
  ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)
  ☆16Updated 2 years ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 4 months ago
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆49Updated 3 weeks ago
• abcucberkeley / PetaKit5D
  ☆39Updated last week