Alternatives and similar repositories for Mitochondria-Analyzer:

Users that are interested in Mitochondria-Analyzer are comparing it to the libraries listed below

• SpatialTranscriptomicsResearch / st_spot_detector
  A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.
  ☆23Updated 2 years ago
• nf-core / imcyto
  Image Mass Cytometry analysis pipeline
  ☆25Updated 3 weeks ago
• beliveau-lab / PaintSHOP_pipeline
  A scalable machine learning pipeline for probe specificity prediction.
  ☆13Updated 11 months ago
• linnarsson-lab / pysmFISH
  Analysis of smFISH data
  ☆11Updated 6 years ago
• MacoskoLab / slideseq-tools
  Tools for analyzing Slide-seq data
  ☆31Updated last year
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆14Updated 3 years ago
• BodenmillerGroup / imctools
  Tools to handle IMC data
  ☆23Updated 2 years ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated 8 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆33Updated last month
• blaineylab / OpticalPooledScreens
  ☆13Updated 2 years ago
• AllenInstitute / cell_type_mapper
  Repository for storing prototype functionality implementations for the BKP
  ☆21Updated this week
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 3 years ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆33Updated last month
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 3 years ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆23Updated 3 months ago
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆50Updated 2 weeks ago
• linnarsson-lab / brainmap
  Allen Brain Atlas utilities, parsers and data structures
  ☆10Updated 7 years ago
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆23Updated 2 years ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆19Updated this week
• cellgeni / notebooks
  Cellular Genetics Informatics Notebooks
  ☆21Updated 3 years ago
• ZhuangLab / MERFISH_analysis
  Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
  ☆49Updated 3 years ago
• wanglab-broad / mCNS-atlas
  ☆17Updated 9 months ago
• pengminshi / MRtree
  MRtree R implementation
  ☆11Updated last year
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆34Updated last year
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆66Updated last year
• mohanbolisetty / CellView
  Simple App to visualize single cell datasets
  ☆19Updated 6 years ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆25Updated 3 months ago
• cancer-evolution / SPIAT
  Spatial Image Analysis of Tissues
  ☆15Updated 2 years ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆23Updated this week
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆26Updated last month