bioasp / caspo
Reasoning on the response of logical signaling networks with Answer Set Programming
☆13Updated 2 years ago
Alternatives and similar repositories for caspo
Users that are interested in caspo are comparing it to the libraries listed below
Sorting:
- An R meta-package for the analysis of Next Generation Sequencing data☆25Updated this week
- Temporal Pathway Synthesizer☆17Updated 10 months ago
- Probabilistic HLA typing☆35Updated 5 years ago
- toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks☆19Updated 3 months ago
- Workflows written in common workflow language (CWL)☆14Updated 6 years ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆25Updated last month
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆13Updated 3 months ago
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆9Updated 5 years ago
- Target prioritization using network representation learning☆11Updated 3 years ago
- ☆21Updated 6 months ago
- Stochastic simulation of next-generation sequencing data from neutrally evolving tumors☆10Updated 8 years ago
- Brief Python implementation of Most Permissive Boolean Networks☆19Updated 3 months ago
- GrandPrix☆16Updated 5 years ago
- Modeling and Analysis of (Statistical) Genetics data in python☆16Updated last month
- Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs …☆14Updated 8 years ago
- ☆41Updated 5 years ago
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19Updated 6 years ago
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆13Updated last week
- Bioinformatics Ketrew Pipelines☆27Updated 3 years ago
- Relative data structures based on the BWT☆12Updated 7 years ago
- Methods for inferring undirected networks from data☆45Updated 4 years ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Updated 7 years ago
- Boolean Network Modeling☆40Updated 5 years ago
- GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge☆14Updated 7 years ago
- A semantically unified SQL and NoSQL query and update system☆17Updated 6 years ago
- A library to build and execute typed scientific workflows☆47Updated 4 months ago
- PyBoolNet is a Python package for the generation, modification and analysis of Boolean networks.☆45Updated 6 months ago
- Fast Inference of Networks from Directed Regulations☆22Updated last year
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆13Updated 2 years ago
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Updated 2 years ago