bioasp / caspo
Reasoning on the response of logical signaling networks with Answer Set Programming
☆13Updated 2 years ago
Alternatives and similar repositories for caspo:
Users that are interested in caspo are comparing it to the libraries listed below
- Temporal Pathway Synthesizer☆17Updated 9 months ago
- An R meta-package for the analysis of Next Generation Sequencing data☆25Updated this week
- Yet Another Motif Discovery Algorithm☆53Updated 6 years ago
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆9Updated 5 years ago
- Single cell network synthesis toolkit☆23Updated 4 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- Probabilistic HLA typing☆35Updated 5 years ago
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆25Updated 2 weeks ago
- stageR package☆11Updated 2 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆41Updated 5 months ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago
- The package provides a set of R functions for interacting with BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) mole…☆10Updated 2 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 2 years ago
- GrandPrix☆16Updated 5 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.☆12Updated 3 weeks ago
- Home of the Genomic Feature and Variation Ontology (GFVO)☆16Updated 4 years ago
- Fishers Exact Test for Python (Cython)☆65Updated last month
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- Brief Python implementation of Most Permissive Boolean Networks☆19Updated 2 months ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Updated 5 years ago
- A collection of bioinformatics algorithms☆12Updated 2 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- Stochastic simulation of next-generation sequencing data from neutrally evolving tumors☆10Updated 8 years ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference☆14Updated 2 years ago
- Tools for building and manipulating graphs in Python☆41Updated 2 years ago
- SPRUCE: Somatic Phylogeny Reconstruction using Combinatorial Enumeration☆14Updated 6 years ago