Membrane protein builder and parameterizer
☆19Sep 1, 2024Updated last year
Alternatives and similar repositories for dabble
Users that are interested in dabble are comparing it to the libraries listed below
Sorting:
- A Heterogeneous Graph Transformer (HGT)-based model for protein function prediction using biological knowledge graphs and protein languag…☆18Jan 27, 2026Updated last month
- Python Client Library for the G2P Portal API☆15Aug 14, 2025Updated 7 months ago
- INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems☆81Updated this week
- Normal Mode Analysis for Macromolecules☆18Apr 1, 2017Updated 8 years ago
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 3 years ago
- sailVina用于Linux的反向对接脚本☆10Feb 14, 2021Updated 5 years ago
- Web application for protein-ligand binding sites analysis and visualization☆16Jan 9, 2023Updated 3 years ago
- Installable VMD as a python module☆149Jun 10, 2025Updated 9 months ago
- a customizable protein feature visualization tool☆18Apr 5, 2023Updated 2 years ago
- Multiscale Simulation Tool for Backmapping☆22Mar 13, 2026Updated last week
- Python script that creates 2D protein-ligand interaction images☆14Apr 23, 2018Updated 7 years ago
- Tutorials and examples for nicer animations (movies) and images in PyMOL.☆21Jan 29, 2015Updated 11 years ago
- Applications of nonequilibrium candidate Monte Carlo (NCMC) to ligand binding mode sampling☆34Nov 12, 2025Updated 4 months ago
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆20Mar 13, 2018Updated 8 years ago
- Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run l…☆18Updated this week
- clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)☆128Apr 25, 2024Updated last year
- A python toolkit for analysing membrane protein-lipid interactions.☆70Oct 22, 2025Updated 4 months ago
- A toolkit for predicting the binding mode of small molecules interacting with proteins based on interfacial rigidification, as assessed b…☆10Nov 22, 2016Updated 9 years ago
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆10Dec 14, 2020Updated 5 years ago
- A python framework to run adaptive Markov state model (MSM) simulation on HPC resources☆18Aug 1, 2025Updated 7 months ago
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- Design platform for creating single-chain polyhedral cages made from coiled-coil building modules☆23Oct 12, 2017Updated 8 years ago
- A mirror of official bio3d development site at Bitbucket: https://bitbucket.org/Grantlab/bio3d. See also bio3d website: http://thegrantl…☆27Apr 30, 2023Updated 2 years ago
- Curso intensivo de Python dictado para personas interesadas en trabajar en las areas de Data Analytics y Data Science☆10Nov 12, 2017Updated 8 years ago
- Python package built on NAMD/OpenMM and OpenMMTools to perform binding free energy calculations using the TIES protocol.☆34Dec 10, 2023Updated 2 years ago
- PDBFixer fixes problems in PDB files☆631Mar 10, 2026Updated last week
- SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinfor…☆11Aug 26, 2025Updated 6 months ago
- ☆38Dec 6, 2012Updated 13 years ago
- ☆10Feb 18, 2020Updated 6 years ago
- Cloud GPU supported NAMD3-based binding free energy difference between two small molecules against the same protein target. This is prob…☆29Nov 2, 2025Updated 4 months ago
- ☆47Mar 5, 2026Updated 2 weeks ago
- Predicting Protein – Ligand Interaction by using Deep Learning Models☆11Nov 13, 2018Updated 7 years ago
- a python package for the interfacial analysis of molecular simulations☆94Mar 9, 2026Updated last week
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- Pymol ScrIpt COllection (PSICO)☆65Mar 13, 2026Updated last week
- ☆40Sep 24, 2025Updated 5 months ago
- ☆14Nov 1, 2017Updated 8 years ago
- A bare metal Python library for building and manipulating protein molecular structures☆17Feb 14, 2025Updated last year
- ☆11Dec 27, 2021Updated 4 years ago