kappamodeler / kappa
A domain-specific language that allows the expression or protein interactions that can be used to build executable models.
☆23Updated last year
Related projects: ⓘ
- Tool suite for kappa models. Documentation and binaries can be found in the release section. Try it online at☆110Updated last week
- Phylogenetic Application written in OCaml and C☆18Updated 4 years ago
- Temporal Pathway Synthesizer☆16Updated 2 months ago
- Bioinformatics pipelines with Haskell and Shake☆55Updated 5 years ago
- A library to build and execute typed scientific workflows☆46Updated 4 months ago
- Relational version of parsing with derivatives code☆42Updated 11 years ago
- Fast all-atom protein structural search engine☆37Updated 2 years ago
- BioLib brings together a set of opensource libraries written in C/C++ and makes them available for all Bio* languages☆37Updated 13 years ago
- MathIOmica is a Mathematica package for omics data analyses☆12Updated last year
- The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installat…☆19Updated 11 years ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Updated 6 years ago
- JudgeD: Probabilistic Datalog with Dependencies☆18Updated 4 years ago
- An experimental Agda kernel for Jupyter☆24Updated 2 years ago
- Algorithms and datastructures for phylogenetics☆14Updated 2 months ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆16Updated this week
- BigWIG, BigBED and TDF for the JVM☆13Updated 3 years ago
- Data Science Ontology☆36Updated this week
- Painless general-purpose sampling.☆23Updated 3 years ago
- Probabilistic HLA typing☆35Updated 5 years ago
- Category theory in Coq, by Jason Gross☆12Updated 9 years ago
- Home of the Genomic Feature and Variation Ontology (GFVO)☆16Updated 3 years ago
- A collection of bioinformatics algorithms☆12Updated 2 years ago
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆46Updated this week
- The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.☆12Updated 7 years ago
- Lightweight Prolog-like Interpreter and nested tuple store for unification-based tuple mining in Python☆20Updated last year
- Build and test new apps for the KBase platform☆26Updated 4 months ago
- Bioinformatics Ketrew Pipelines☆27Updated 2 years ago
- ☆15Updated this week
- Keep Track of Experimental Workflows☆76Updated 6 years ago