Alternatives and similar repositories for notebook-molecular-visualization

Users that are interested in notebook-molecular-visualization are comparing it to the libraries listed below

• Autodesk / molecular-design-toolkit
  Notebook-integrated tools for molecular simulation and visualization
  ☆168Updated 7 years ago
• insilichem / pychimera
  Use UCSF Chimera Python API in a standard interpreter
  ☆59Updated 6 years ago
• cinfony / cinfony
  Simplified and standard interface to a number of cheminformatics toolkits
  ☆88Updated last year
• avirshup / py3dmol
  ☆128Updated 9 years ago
• 3dmol / jupyterlab_3Dmol
  JupyterLab extension for py3Dmol
  ☆22Updated 3 years ago
• nglviewer / mdsrv
  MD trajectory server
  ☆35Updated 2 years ago
• michellab / BioSimSpace
  Code and resources for the EPSRC BioSimSpace project.
  ☆78Updated last month
• GrossfieldLab / loos
  LOOS: a lightweight object-oriented structure analysis library
  ☆125Updated this week
• whitead / molcloud
  Make a bunch of molecules
  ☆96Updated 10 months ago
• OpenSourceMolecularModeling / OpenSourceMolecularModeling.github.io
  Catalog of Open Source Molecular Modeling Projects
  ☆106Updated 8 months ago
• markovmodel / pyemma_tutorials
  How to analyze molecular dynamics data with PyEMMA
  ☆78Updated 6 years ago
• openmm / openmm-setup
  An application for configuring and running simulations with OpenMM
  ☆74Updated 2 weeks ago
• choderalab / openmoltools
  An open set of tools for automating tasks relating to small molecules
  ☆68Updated 3 years ago
• mms-fcul / PypKa
  A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism
  ☆60Updated last year
• apahl / mol_frame
  Chemical Structure Handling for Pandas DataFrames
  ☆33Updated 2 years ago
• ppqm / ppqm
  Enable cheminformatics and quantum chemistry
  ☆76Updated last year
• openkinome / kinoml
  Structure-informed machine learning for kinase modeling
  ☆58Updated this week
• Mishima-syk / psikit
  psi4+RDKit
  ☆102Updated 4 months ago
• dseeliger / pmx
  Toolkit for free-energy calculation setup/analysis and biomolecular structure handling
  ☆65Updated 4 years ago
• whitead / molbloom
  Molecular bloom filter tool
  ☆125Updated last month
• apahl / rdkit_ipynb_tools
  RDKit Tools for the IPython Notebook
  ☆46Updated 6 years ago
• samplchallenges / SAMPL6
  Challenge inputs, details, and results for the SAMPL6 series of challenges
  ☆54Updated 3 years ago
• MobleyLab / basic_simulation_training
  A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …
  ☆115Updated 6 years ago
• pnnl / isicle
  In silico chemical library engine for high-accuracy chemical property prediction
  ☆61Updated 5 months ago
• rdkit / UGM_2016
  Materials from the 2016 RDKit UGM
  ☆40Updated 8 years ago
• michellab / Sire
  Sire Molecular Simulations Framework
  ☆96Updated 2 years ago
• MobleyLab / GuthrieSolv
  Experimental small molecule hydration free energy dataset
  ☆30Updated 3 years ago
• choderalab / ensembler
  Automated omics-scale protein modeling and simulation setup.
  ☆53Updated 4 years ago
• volkamerlab / opencadd
  A Python library for structural cheminformatics
  ☆102Updated 5 months ago
• Amber-MD / pytraj
  Python interface of cpptraj
  ☆183Updated 8 months ago