Alternatives and similar repositories for mmterm

Users that are interested in mmterm are comparing it to the libraries listed below

• samirelanduk / atomium
  Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
  ☆106Updated last year
• drorlab / pensa
  PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
  ☆143Updated 7 months ago
• Electrostatics / apbs
  Software for biomolecular electrostatics and solvation calculations
  ☆107Updated last year
• KULL-Centre / CALVADOS
  ☆71Updated 3 months ago
• getcontacts / getcontacts
  Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
  ☆128Updated 2 years ago
• Tsjerk / Insane
  INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems
  ☆65Updated last year
• mittinatten / freesasa
  C-library for calculating Solvent Accessible Surface Areas
  ☆156Updated 2 months ago
• PDBeurope / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆106Updated last year
• avirshup / py3dmol
  ☆127Updated 9 years ago
• jchodera / statmech-for-biochemists
  A primer on statistical mechanics for biochemists
  ☆47Updated 3 years ago
• maccallumlab / meld
  Modeling with limited data
  ☆59Updated 2 months ago
• clauswilke / PeptideBuilder
  A simple Python library to generate model peptides
  ☆87Updated 4 years ago
• michellab / BioSimSpace
  Code and resources for the EPSRC BioSimSpace project.
  ☆79Updated 2 weeks ago
• Electrostatics / pdb2pqr
  PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.
  ☆153Updated 6 months ago
• freesasa / freesasa-python
  FreeSASA Python Module
  ☆56Updated last month
• srnas / barnaba
  Analyse Nucleic Acids Structure and Simulations with baRNAba
  ☆45Updated last year
• marrink-lab / vermouth-martinize
  Describe and apply transformation on molecular structures and topologies
  ☆119Updated last week
• rlabduke / MolProbity
  Protein and nucleic acid validation service
  ☆86Updated last year
• pstansfeld / MemProtMD
  ☆45Updated 4 months ago
• maccallumlab / martini_openmm
  ☆56Updated 2 years ago
• npschafer / openawsem
  An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM
  ☆37Updated 3 months ago
• kassonlab / gmxapi
  (outdated) fork of https://gitlab.com/gromacs/gromacs
  ☆53Updated 2 years ago
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆65Updated 5 months ago
• volkamerlab / opencadd
  A Python library for structural cheminformatics
  ☆102Updated 4 months ago
• openmm / openmm-setup
  An application for configuring and running simulations with OpenMM
  ☆73Updated last month
• tristanic / isolde
  Interactive molecular dynamics based model building into low-resolution crystallographic and cryo-EM maps
  ☆38Updated last month
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆92Updated 3 months ago
• GrossfieldLab / loos
  LOOS: a lightweight object-oriented structure analysis library
  ☆125Updated 5 months ago
• MobleyLab / basic_simulation_training
  A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …
  ☆115Updated 6 years ago
• KULL-Centre / papers
  Material from papers from KULL centre
  ☆69Updated last year