View proteins and trajectories in the terminal
☆118Aug 8, 2020Updated 5 years ago
Alternatives and similar repositories for mmterm
Users that are interested in mmterm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modeling molecular ensembles with scalable data structures and parallel computing☆37Mar 11, 2026Updated 2 months ago
- The GB99dms implicit solvent force field for proteins, plus scripts and data☆27Sep 19, 2025Updated 8 months ago
- An open-source library for the analysis of protein interactions.☆35Dec 5, 2021Updated 4 years ago
- An automated framework for generating optimized partial charges for molecules☆40May 19, 2026Updated last week
- A dependency-free cross-platform swiss army knife for PDB files.☆453May 15, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Scripts, inputs and the results generated as part of the training the Sage line of OpenFF force fields.☆21Jun 30, 2025Updated 10 months ago
- Functions to scrape GPCR data from the web.☆19Nov 18, 2021Updated 4 years ago
- Differentiate all the things!☆173Jan 9, 2026Updated 4 months ago
- ATOM3D: tasks on molecules in three dimensions☆320Mar 2, 2023Updated 3 years ago
- A repository of update in molecular dynamics field by recent progress in machine learning and deep learning.☆341Jan 25, 2026Updated 4 months ago
- Differentiably evaluate energies using SMIRNOFF force fields☆20May 19, 2026Updated last week
- Visual Interactive Analysis of Molecular Dynamics☆320Updated this week
- Curses based ASCII molecule viewer for terminals.☆410Feb 17, 2025Updated last year
- PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.☆149Feb 12, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆58May 3, 2024Updated 2 years ago
- Computational chemistry benchmark data sets for non-covalent interactions☆29Jan 13, 2025Updated last year
- the simple alchemistry library☆239Jan 23, 2026Updated 4 months ago
- Tools for preparation and analysis of systems for molecular dynamics.☆32Dec 5, 2025Updated 5 months ago
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- LOOS: a lightweight object-oriented structure analysis library☆130May 15, 2026Updated last week
- Unified Free Energy Dynamics (UFED) simulations with OpenMM☆35Aug 20, 2025Updated 9 months ago
- Molecular Property Prediction using GP with a SOAP kernel☆21Nov 16, 2020Updated 5 years ago
- Differentiable molecular simulation of proteins with a coarse-grained potential☆56Apr 3, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Julia tools for reading Crystallographic Information Framework (CIF) files and dictionaries☆15Apr 10, 2026Updated last month
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated last month
- OpenMM plugin to define forces with neural networks☆220Feb 24, 2025Updated last year
- A library to perform targeted free energy perturbation with normalizing flows.☆11Sep 1, 2025Updated 8 months ago
- An all-atom protein structure dataset for machine learning.☆364Mar 16, 2024Updated 2 years ago
- Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)☆106Dec 7, 2023Updated 2 years ago
- Describe and apply transformation on molecular structures and topologies☆144May 5, 2026Updated 3 weeks ago
- A comprehensive toolkit for predicting free energies☆60Jan 10, 2025Updated last year
- Extensible Surrogate Potential of Ab initio Learned and Optimized by Message-passing Algorithm 🍹https://arxiv.org/abs/2010.01196☆271Apr 16, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- PiViewer: an open-source tool for automated detection and display of pi-pi interactions☆14Jun 6, 2018Updated 7 years ago
- Absolute solvation free energy calculations with OpenFF and OpenMM☆30Dec 1, 2024Updated last year
- The Open Forcefield Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. Documentation avai…☆392Updated this week
- Python interface for the RCSB PDB search API.☆66Mar 26, 2025Updated last year
- Development version of plumed 2☆498May 13, 2026Updated last week
- A deep learning-based framework to uniquely identify an uncorrelated, isometric and meaningful latent representation.☆19Sep 12, 2023Updated 2 years ago
- Interactive plotting of data annotated with molecule structures.☆12Nov 30, 2023Updated 2 years ago