williamgilpin / pypdbLinks
A Python API for the RCSB Protein Data Bank (PDB)
☆326Updated 10 months ago
Alternatives and similar repositories for pypdb
Users that are interested in pypdb are comparing it to the libraries listed below
Sorting:
- PDBFixer fixes problems in PDB files☆545Updated 2 months ago
- Cloud-based molecular simulations for everyone☆438Updated last month
- A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files☆177Updated 5 years ago
- Collected scripts for Pymol☆480Updated last month
- A dependency-free cross-platform swiss army knife for PDB files.☆412Updated 9 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆267Updated 3 months ago
- Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme …☆536Updated 2 weeks ago
- P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.☆326Updated last month
- Antibody Numbering and Antigen Receptor ClassIfication☆213Updated last year
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆284Updated 4 months ago
- Application to assign secondary structure to proteins☆200Updated last week
- Interaction Fingerprints for protein-ligand complexes and more☆416Updated this week
- Protein hallucination and inpainting with RoseTTAFold☆259Updated 2 years ago
- PROPKA predicts the pKa values of ionizable groups in proteins and protein-ligand complexes based in the 3D structure.☆297Updated last year
- Google Colab Tutorials for IBM3202☆258Updated 6 months ago
- ☆313Updated 9 months ago
- Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting f…☆267Updated last year
- fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scien…☆354Updated 8 months ago
- A Python Package for Protein Dynamics Analysis☆476Updated last month
- gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.☆259Updated last week
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆312Updated 7 months ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆359Updated last year
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆339Updated 2 weeks ago
- A collection of *fold* tools☆293Updated 8 months ago
- ChatMol☆229Updated 2 months ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆125Updated 3 years ago
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design