Alternatives and similar repositories for AltumAge

Users that are interested in AltumAge are comparing it to the libraries listed below

• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆124Updated 2 months ago
• phbradley / tcr-dist
  Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
  ☆86Updated 4 years ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆33Updated 9 months ago
• theislab / tcellmatch
  ☆41Updated 5 years ago
• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆97Updated 4 years ago
• statbiophys / OLGA
  Compute generation probabilities of CDR3 amino acid and nucleotide sequences
  ☆62Updated last week
• JamieHeather / stitchr
  Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
  ☆59Updated 2 months ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆98Updated 8 months ago
• mhorlbeck / ScreenProcessing
  ☆67Updated 2 years ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆81Updated last year
• alex-trapp / scAge
  Profiling epigenetic age in single cells
  ☆42Updated 3 years ago
• lcamillo / CpGPT
  CpGPT: a Foundation Model for DNA Methylation.
  ☆59Updated 2 months ago
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆67Updated last week
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆121Updated 2 months ago
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆116Updated last week
• s175573 / GIANA
  Ultrafast TCR clustering algorithm based on geometric isometry
  ☆69Updated last year
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆109Updated 2 years ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆47Updated 3 years ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆87Updated 3 years ago
• czbiohub-sf / tabula-muris-senis
  Tabula Muris Senis
  ☆107Updated 2 years ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆64Updated 7 months ago
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆92Updated 2 months ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆132Updated 9 months ago
• kundajelab / chrombpnet
  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
  ☆189Updated 2 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆153Updated last year
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆43Updated 9 months ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆118Updated 3 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆72Updated last week
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆96Updated 6 years ago
• YeoLab / eCLIP
  ☆38Updated 3 years ago