deep-learning-for-biology/notebooks external links

---

GitHub - View repository

GitHub.dev - Open in online code editor

Star history - Growth chart over time

deps.dev - Dependencies and security vulnerabilities

Gitingest - Export source code for LLM usage

Repomix - Export source code for LLM usage

uithub - Export source code for LLM usage

Close

deep-learning-for-biology/notebooks

Readme badge preview -

If you own this repo, copy the snippet below and add it to your README.md

---

Copy

[![RelatedRepos](https://img.shields.io/badge/related-repos-yellow)](https://relatedrepos.com/gh/deep-learning-for-biology/notebooks)

Close

deep-learning-for-biology / notebooksView on GitHubMore

• External links
• Readme badge

Notebooks to follow along with "Deep Learning for Biology" Chapters 2 to 6.

☆115Jan 21, 2026Updated last month

Alternatives and similar repositories for notebooks

Users that are interested in notebooks are comparing it to the libraries listed below

• esbgkannan / chumby

  View on GitHub
  A package for making tree-based visualizations for embedding vectors
  ☆10Feb 6, 2023Updated 3 years ago
• ngs-docs / 2023-snakemake-book-draft

  View on GitHub
  A DRAFT, early stage book on snakemake.
  ☆22Nov 1, 2023Updated 2 years ago
• Tessier-Lab-UMich / Emi_Pareto_Opt_ML

  View on GitHub
  ☆23Jun 24, 2022Updated 3 years ago
• kvaddad1 / impute-first

  View on GitHub
  ☆12Sep 5, 2025Updated 6 months ago
• pogorely / TIRTL

  View on GitHub
  Code for paired TCR data analysis from TIRTL-seq experiments
  ☆10Nov 24, 2025Updated 3 months ago
• KennethJHan / Bioinformatics_Biopython

  View on GitHub
  ☆13Mar 10, 2019Updated 6 years ago
• Listen-lei / AttentionVGAE-main

  View on GitHub
  ☆10Apr 22, 2024Updated last year
• CBIIT / KDS

  View on GitHub
  KDS software for Kinase Drug Selectivity
  ☆11Jun 8, 2023Updated 2 years ago
• connectbern / stayinginbern

  View on GitHub
  ☆39Sep 1, 2025Updated 6 months ago
• dchary / ucdeconvolve_paper

  View on GitHub
  UniCell Deconvolve Paper
  ☆10Apr 25, 2023Updated 2 years ago
• masastat / RENGE

  View on GitHub
  ☆11Dec 17, 2025Updated 2 months ago
• rvinas / nnn

  View on GitHub
  Neural network from scratch in Python using Numpy
  ☆11May 28, 2017Updated 8 years ago
• IKIM-Essen / RiboSnake

  View on GitHub
  16S pipeline using qiime2 created with snakemake
  ☆12Jan 2, 2026Updated 2 months ago
• jupyternims / docker-image

  View on GitHub
  Docker image for
  ☆11Dec 25, 2017Updated 8 years ago
• vlyubchich / tsar

  View on GitHub
  Time series analysis in R
  ☆14Nov 17, 2025Updated 3 months ago
• chanzuckerberg / scEvalsJam

  View on GitHub
  ☆12Aug 29, 2024Updated last year
• tdseher / addtag-project

  View on GitHub
  CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
  ☆13Oct 18, 2021Updated 4 years ago
• flox / floxenvs

  View on GitHub
  Example Flox environments
  ☆18Mar 2, 2026Updated last week
• robertgv / aws-community-builders-dashboard

  View on GitHub
  Welcome to the AWS Community Builders Dashboard repository!
  ☆15Aug 29, 2025Updated 6 months ago
• emarcos / immunoglobulin_design

  View on GitHub
  ☆10Apr 1, 2022Updated 3 years ago
• tjiagoM / gtex-transcriptome-modelling

  View on GitHub
  Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
  ☆11Jun 2, 2021Updated 4 years ago
• winterjung / study

  View on GitHub
  Today I Learnd
  ☆10Mar 30, 2021Updated 4 years ago
• automagictv / remy

  View on GitHub
  A Telegram bot that will send you recipes for the ingredients in your fridge.
  ☆11Apr 10, 2021Updated 4 years ago
• hsulab-arc / BridgeRNA2024

  View on GitHub
  ☆11Aug 2, 2024Updated last year
• esrice / hic-pipeline

  View on GitHub
  A pipeline for scaffolding a genome assembly using Hi-C
  ☆13Nov 24, 2022Updated 3 years ago
• NaturalAntibody / riot_na

  View on GitHub
  ☆15Dec 19, 2025Updated 2 months ago
• YuSugihara / ancseq

  View on GitHub
  Wrapper tool for ancestral sequence and indel reconstruction using IQ-TREE
  ☆11Oct 20, 2025Updated 4 months ago
• ncbi / CF-random

  View on GitHub
  ☆11Sep 17, 2024Updated last year
• cambridgeltl / chat

  View on GitHub
  ☆10Jan 25, 2019Updated 7 years ago
• ychoi-kr / langchain-book

  View on GitHub
  《챗GPT와 랭체인을 활용한 LLM 기반 AI 앱 개발》(2024년 6월 출간) 예제 코드
  ☆11Mar 7, 2025Updated last year
• tseemann / kounta

  View on GitHub
  🧮 🔢 Generate multi-sample k-mer count matrix from WGS
  ☆11Jan 17, 2026Updated last month
• jonas-fuchs / MSAexplorer

  View on GitHub
  A python graphing library for plotting multiple sequence alignments. An app build on top that runs everything in your browser.
  ☆27Updated this week
• gerstung-lab / tensorsignatures

  View on GitHub
  A python package for learning mutational signatures and their multidimensional genomic properties
  ☆15Sep 1, 2020Updated 5 years ago
• liushang17 / DESJ-detection

  View on GitHub
  A computation framework designed to detect differential junctions usage between two groups at single cell level
  ☆13Feb 1, 2021Updated 5 years ago
• must-bioinfo / fastCNV

  View on GitHub
  fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data
  ☆41Updated this week
• willem-stock / CONCOMPRA

  View on GitHub
  consensus approach for community profiling with nanopore amplicon sequencing data
  ☆16Sep 30, 2024Updated last year
• bjpublic / biopython

  View on GitHub
  ☆13Oct 8, 2020Updated 5 years ago
• jasonyim2 / book3

  View on GitHub
  ☆13Jul 31, 2025Updated 7 months ago
• macwiatrak / GeneBac

  View on GitHub
  GeneBac: a modular framework for predicting antibiotic resistance from DNA sequence.
  ☆16Jan 3, 2024Updated 2 years ago