Notebooks to follow along with "Deep Learning for Biology" Chapters 2 to 6.
☆146Mar 19, 2026Updated 6 months ago
Alternatives and similar repositories for notebooks
Users that are interested in notebooks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Supporting python library for "Deep Learning for Biology".☆32Mar 19, 2026Updated 6 months ago
- Tutorial on large language models for genomics☆287Jun 5, 2025Updated last year
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 6 years ago
- Template for building your own portfolio☆27Jul 2, 2025Updated last year
- A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessib…☆523Dec 26, 2025Updated 8 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆10Jan 19, 2019Updated 7 years ago
- EasyFigAssembler simplifies the assembly of publication-quality scientific figures. It helps free scientists from technical burdens, so w…☆34Dec 28, 2025Updated 8 months ago
- Charting spatial ligand-target activity using Renoir (ligand-taRgEt iNteractions acrOss spatIal topogRaphy)☆23Jun 26, 2026Updated 2 months ago
- ☆45Oct 30, 2024Updated last year
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 7 months ago
- ☆18Oct 22, 2025Updated 10 months ago
- Machine Learning for Genomics Course.☆22Feb 15, 2023Updated 3 years ago
- ☆29Dec 15, 2025Updated 9 months ago
- PDB-CAT aims to automatically categorize the mmCIF PDB structures based on the type of interaction between atoms in the protein and the l…☆16Jan 21, 2026Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- July 2022 NEAIR workshop: tidyverse intro for beginners☆12Jul 11, 2022Updated 4 years ago
- KDS software for Kinase Drug Selectivity☆10Jun 22, 2026Updated 2 months ago
- ML course materials for bioinformatics students following the Basic Machine Learning for Bioinformatics course at Utrecht University. Cou…☆18Feb 27, 2023Updated 3 years ago
- ☆10Mar 4, 2025Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆121Aug 24, 2026Updated 3 weeks ago
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated last year
- Files and code for the ODSC tutorial "Sequence Modelling with Deep Learning"☆11Dec 8, 2022Updated 3 years ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆56Aug 11, 2025Updated last year
- ☆27May 29, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Awesome-AI-Meets-Biology is a collection of state-of-the-art, novel, exciting LLMs and agents on biomedical and bioinformatic fields.☆40Updated this week
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- Vaeda method for computational doublet annotation☆21Feb 1, 2026Updated 7 months ago
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆232Aug 13, 2025Updated last year
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆78Mar 7, 2025Updated last year
- This repo contains the results data for Round 2 of EGFR Protein Design Competition.☆20Mar 18, 2025Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 6 years ago
- CheMeleon Descriptor-based Foundation Model☆160Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆18Mar 17, 2026Updated 6 months ago
- A practical guide to modern bioinformatics☆35Jul 27, 2026Updated last month
- A DRAFT, early stage book on snakemake.☆25Nov 1, 2023Updated 2 years ago
- A simple app to generate a predictive ML model from any ChEMBL target via UniprotID☆18Apr 24, 2026Updated 4 months ago
- inference of transcription factor activity at the single cell level☆29Jul 2, 2026Updated 2 months ago
- 🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …☆55Updated this week
- 16S pipeline using qiime2 created with snakemake☆12Updated this week