Beginner-friendly introduction to single-cell RNA-seq analysis using Scanpy, designed for lab onboarding.
☆14Apr 15, 2026Updated 6 months ago
Alternatives and similar repositories for single_cell_in_python_for_beginners
Users that are interested in single_cell_in_python_for_beginners are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- InstaNovo-FM: a self-supervised foundation model for proteomics☆14Updated this week
- 3D segmentation for cells and organoids of 3D multichannel images☆35Jun 23, 2026Updated 4 months ago
- Course of Machine Learning for Biomedical Data -TECNUN University of Navarra☆12Apr 21, 2026Updated 6 months ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆14Jul 31, 2015Updated 11 years ago
- Bioinformatics course (WSBIM1322)☆18Mar 31, 2026Updated 7 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A project - tutorial. Differential expression of RNAseq raw counts data using a Real world dataset in R. Packages covered 'DESeq2' and 'E…☆14Nov 18, 2022Updated 3 years ago
- B-cell Hybrid Immune Variant Engine☆12Oct 16, 2026Updated 3 weeks ago
- Python package for Single-Cell Euclidean Network Embedding (SCENE): interpretable joint embeddings of cells and genes from single-cell RN…☆20Sep 21, 2026Updated last month
- This repo is designed as a step-by-step tutorial to teach RNA-seq analysis☆21Dec 21, 2025Updated 10 months ago
- ☆18Aug 14, 2026Updated 2 months ago
- ☆31Apr 5, 2025Updated last year
- ☆10Oct 10, 2024Updated 2 years ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆11Dec 12, 2022Updated 3 years ago
- This repo is mainly for beginners to intermediate level ML/Bioiniformatics engineers/students/enthusiasts. It mainly focus on creating a …☆15Dec 28, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- 📺 Discover the latest machine learning / AI courses on YouTube.☆26Nov 26, 2023Updated 2 years ago
- Benchmarking for gene expression from single cell latent representations☆22Updated this week
- A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.☆14May 31, 2021Updated 5 years ago
- ☆12Jan 27, 2023Updated 3 years ago
- ☆11Jul 17, 2026Updated 3 months ago
- Logging of scripts suitable for clinical trials☆21Updated this week
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆11Apr 30, 2019Updated 7 years ago
- tension inference for epithelial cells☆21Nov 6, 2023Updated 3 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆29Jan 10, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A comparative analysis of 4 ML algorithms. This Hypertension Risk Prediction Model can be described as a machine learning model designed …☆11Jan 25, 2024Updated 2 years ago
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- Inference of switch-like differential expression along single-cell trajectories☆23Oct 24, 2017Updated 9 years ago
- Recognizing HGT Events in Assemblies☆10May 12, 2026Updated 6 months ago
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆40Feb 6, 2026Updated 9 months ago
- MBINF Introduction to Python Workshop 2024☆23Sep 6, 2024Updated 2 years ago
- Repository for the ISMB/ECCB workshop "A practical introduction to multi-omics integration and network analysis"☆11Jul 23, 2021Updated 5 years ago
- ☆21Dec 8, 2022Updated 3 years ago
- Python version of Generally Applicable Gene-set Enrichment for Pathway Analysis (GAGE) - with extra features☆15Sep 16, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This script explicitly includes the parameters such as fiber length, diameter, orientation, distribution, and fiber volume fraction. Stra…☆16Sep 8, 2021Updated 5 years ago
- ☆11Sep 28, 2026Updated last month
- Automated quantification of fibrous networks☆13Mar 10, 2026Updated 8 months ago
- Collections of transcription factor binding motifs for the software suite Regulatory Sequence Analysis Tools (RSAT)☆11May 16, 2026Updated 5 months ago
- scRNA seq analysis using Seurat V3☆13Jun 23, 2021Updated 5 years ago
- ☆10May 31, 2023Updated 3 years ago
- Notes from Andrew Blumberg's class on equivariant homotopy theory☆18Aug 19, 2025Updated last year
Are these results useful?