Alternatives and similar repositories for pyami

Users that are interested in pyami are comparing it to the libraries listed below

• NFDI4Chem / knowledge_base
  A place for all knowledge regarding Research Data Management (RDM) in Chemistry
  ☆11Updated last week
• sorgerlab / famplex
  Resources for grounding protein families and complexes from text and describing their hierarchical relationships.
  ☆18Updated last year
• VariantEffect / mavehgvs
  A specification and Python implementation for representing variants from Multiplexed Assays of Variant Effect.
  ☆10Updated 2 months ago
• BioInterchange / Ontologies
  Home of the Genomic Feature and Variation Ontology (GFVO)
  ☆16Updated 4 years ago
• biolink / biolink-model-toolkit
  A collection of useful python functions for looking up information and working with the Biolink Model
  ☆24Updated 3 weeks ago
• krassowski / nbpipeline
  Snakemake-like pipeline manager for reproducible Jupyter Notebooks
  ☆17Updated 3 years ago
• jakelever / knowledgediscovery
  Analysis code for knowledge discovery project
  ☆12Updated 6 years ago
• gmiaslab / mathiomica
  MathIOmica is a Mathematica package for omics data analyses
  ☆12Updated last year
• Imamachi-n / BioRxivCurator
  Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.
  ☆11Updated 5 years ago
• pirl-unc / mhcgnomes
  Parsing MHC nomenclature in the wild
  ☆17Updated 3 months ago
• calipho-sib / cellosaurus
  A knowledge resource on cell lines - From SIB CALIPHO group
  ☆14Updated last year
• hetio / hetmatpy
  Python package for matrix storage and operations on hetnets
  ☆15Updated 2 years ago
• gyorilab / indra_db
  A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…
  ☆17Updated 2 weeks ago
• seffnet / seffnet
  Network representation learning on drug-target-side effects-indication graphs for side effect prediction
  ☆13Updated 5 years ago
• fusion-jena / computational-reproducibility-pmc
  ☆11Updated 7 months ago
• biorack / metatlas
  Metabolite Atlas Main Repository
  ☆16Updated this week
• broadinstitute / gene-hints
  Discoverability for gene search
  ☆12Updated 2 years ago
• cthoyt / doctoral-thesis
  📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology
  ☆29Updated 5 years ago
• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆27Updated 2 years ago
• pykeen / ranking-metrics-manuscript
  📐 Results for the Ranking Metrics submission @ GLB 2022
  ☆11Updated 3 years ago
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 3 months ago
• KarrLab / intro_to_wc_modeling
  Whole-cell modeling tutorials
  ☆16Updated 5 years ago
• yoavram / UnderTheRug
  Repo for "Evolution on rugged adaptive landscapes"
  ☆12Updated 3 years ago
• opentargets-archive / data_pipeline
  Code for the data processing pipeline
  ☆17Updated 4 years ago
• ncats / stitcher
  A stitching platform for InXight
  ☆15Updated 3 months ago
• gyorilab / mira
  MIRA: machine-assisted modeling of dynamical systems
  ☆13Updated 2 months ago
• biolink / biolinkml
  DEPRECATED: replaced by linkml
  ☆23Updated 4 years ago
• michaelkyu / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆18Updated 6 years ago
• paperfetcher / paperfetcher
  Pip-installable Python package to automate handsearching and citation searching for systematic reviews.
  ☆13Updated last year
• kbase / kb_sdk
  Build and test new apps for the KBase platform
  ☆28Updated 4 months ago