Alternatives and similar repositories for MRIcron

Users that are interested in MRIcron are comparing it to the libraries listed below

• neurolabusc / surf-ice
  GLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D…
  ☆118Updated 2 weeks ago
• neurolabusc / MRIcroGL10_OLD
  DEPRECATED development has moved to https://github.com/rordenlab/MRIcroGL
  ☆59Updated 4 years ago
• rordenlab / MRIcroGL
  v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.
  ☆237Updated 2 weeks ago
• neurolabusc / NiiStat
  NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations
  ☆32Updated 5 years ago
• rordenlab / i2nii
  Convert various image formats to NIfTI.
  ☆13Updated 3 years ago
• neurolabusc / Clinical
  Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)
  ☆46Updated 4 years ago
• bioimagesuiteweb / bisweb
  This is the repository for the BioImage Suite Web Project
  ☆83Updated 6 months ago
• frankyeh / DSI-Studio
  A Tractography Tool for Diffusion MRI
  ☆137Updated last week
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆145Updated this week
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆71Updated this week
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆100Updated last month
• BIC-MNI / minc-toolkit-v2
  Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
  ☆53Updated 2 months ago
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆66Updated last week
• vistalab / vistasoft
  VISTASOFT is the main software repository of the VISTA lab at Stanford University.
  ☆152Updated 8 months ago
• MRtrix3 / mrtrix3
  MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), …
  ☆321Updated this week
• dorianps / LINDA
  Lesion Identification with Neighborhood Data Analysis
  ☆21Updated 5 years ago
• mezera / mrQ
  mrQ_BoxJoinBox
  ☆22Updated last year
• spinicist / QUIT
  A set of tools for processing Quantitative MR Images
  ☆64Updated 3 weeks ago
• tkkarjal / magia
  Automated brain PET analysis pipeline
  ☆27Updated 2 years ago
• afni / afni
  Official AFNI source and documentation
  ☆175Updated last week
• neurolabusc / Bru2Nii
  Bruker ParaVision to NIfTI conversion
  ☆13Updated 5 years ago
• npnl / PALS
  Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis a…
  ☆24Updated 4 months ago
• UNFmontreal / Dcm2Bids
  Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
  ☆182Updated last month
• Washington-University / gradunwarp
  Gradient Unwarping in Python
  ☆37Updated 7 months ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆69Updated last year
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆100Updated 11 months ago
• neurolabusc / nii_preprocess
  nii_preprocess adapted for LARC and ABC studies at UofSC
  ☆22Updated 3 years ago
• JosePMarques / MP2RAGE-related-scripts
  MP2RAGE Scripts - T1 map correction & Background noise removal
  ☆64Updated 2 years ago
• nipy / heudiconv
  Flexible DICOM conversion into structured directory layouts
  ☆264Updated last week
• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆77Updated 4 years ago