Alternatives and similar repositories for malariasimulation:

Users that are interested in malariasimulation are comparing it to the libraries listed below

• mrc-ide / drjacoby
  Flexible Markov chain monte carlo via reparameterization
  ☆12Updated 7 months ago
• mrc-ide / individual
  R Package for individual based epidemiological models
  ☆30Updated 5 months ago
• nfidd / nfidd
  Course on nowcasting and forecasting of infectious disease dynamcis
  ☆14Updated 3 weeks ago
• calumdavey / RUG
  Repo for the LSHTM R Users Group (RUG)
  ☆9Updated 3 years ago
• goldingn / neuts2efficacy
  modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission
  ☆18Updated last year
• idem-lab / conmat
  Create Contact Matrices from Population Data
  ☆19Updated 2 weeks ago
• mrc-ide / naomi
  Naomi model for subnational HIV estimation
  ☆9Updated this week
• mrc-ide / epireview
  ☆30Updated last month
• athowes / thesis
  Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD, Imperial College London, 2023)
  ☆16Updated last month
• cran-task-views / Epidemiology
  CRAN Task View: Epidemiology
  ☆23Updated 3 weeks ago
• rosannaclairebarnard / covidm-mtd-Omi
  Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…
  ☆11Updated 2 years ago
• reconhub / trendbreaker
  Analysing epidemic trends using AutoML approaches.
  ☆18Updated 3 years ago
• mrc-ide / sircovid
  ☆28Updated 3 months ago
• mhoehle / STA427_SM4IDE
  Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH
  ☆18Updated 3 years ago
• epiforecasts / inc2prev
  Estimate epidemiological quantities from repeated cross-sectional prevalence measurements
  ☆17Updated last year
• Bisaloo / contactdata
  R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)
  ☆9Updated 2 months ago
• ImperialCollegeLondon / epidemia
  epidemia package
  ☆48Updated 2 years ago
• adrian-lison / EpiSewer
  An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.
  ☆18Updated this week
• adamkucharski / 2020-cov-tracing
  Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…
  ☆13Updated 2 years ago
• WHO-Collaboratory / collaboratory-epiparameter-community
  ☆39Updated 3 weeks ago
• epiverse-trace / cfr
  R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series
  ☆13Updated last week
• akira-endo / COVID19_clustersize
  Analysis of COVID-19 transmission using cluster size distribution
  ☆11Updated 2 years ago
• WHO-Collaboratory / collaboratory-epipipeline-community
  ☆14Updated last year
• covid19br / nowcaster
  Repository to the R package nowcaster, nowcasting with INLA
  ☆18Updated 3 months ago
• goldingn / covid19_australia_interventions
  Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia
  ☆13Updated last year
• kpzoo / EpiFilter
  Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…
  ☆22Updated last year
• BDI-pathogens / EpiLine
  Bayesian Modelling in Epidemiology Case Line Lists
  ☆13Updated 9 months ago
• reconhub / earlyR
  Estimation of infectiousness in the early stage of an outbreak, with short-term predictions.
  ☆9Updated 4 years ago