mrc-ide / malariasimulationLinks
The malaria model
☆20Updated 2 weeks ago
Alternatives and similar repositories for malariasimulation
Users that are interested in malariasimulation are comparing it to the libraries listed below
Sorting:
- Create Contact Matrices from Population Data☆20Updated last week
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆62Updated 2 weeks ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated this week
- ☆42Updated 3 months ago
- ☆32Updated last month
- Course on nowcasting and forecasting of infectious disease dynamics☆21Updated last week
- R Package for individual based epidemiological models☆30Updated 3 months ago
- ☆29Updated 5 months ago
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆35Updated last week
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Estimate epidemiological delay distributions with brms☆15Updated 2 weeks ago
- An R package for the analysis of infectious disease transmission data☆10Updated 4 years ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated 3 months ago
- R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…☆14Updated 9 months ago
- R package for deriving social mixing matrices from survey data.☆42Updated last week
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆20Updated 3 years ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated last week
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- SEIR+ model☆19Updated 3 months ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- ☆12Updated this week
- ☆17Updated 4 years ago
- Flexible Markov chain monte carlo via reparameterization☆12Updated last year
- Repository to the R package nowcaster, nowcasting with INLA☆22Updated 2 months ago
- Infectious disease model library and utilities☆15Updated 3 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated last year
- Utilities for Scoring and Assessing Predictions☆58Updated 3 weeks ago
- ☆19Updated this week
- R package for estimating excess deaths from daily count data☆21Updated 7 months ago