mrc-ide / malariasimulation
The malaria model
☆17Updated last week
Alternatives and similar repositories for malariasimulation:
Users that are interested in malariasimulation are comparing it to the libraries listed below
- R Package for individual based epidemiological models☆30Updated 6 months ago
- Extract raw underlying data from PDF figures☆55Updated last year
- ☆29Updated 2 weeks ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 2 months ago
- Code to test Rt estimates against synthetic data☆17Updated 4 years ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆18Updated 3 years ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆19Updated 5 months ago
- Course on nowcasting and forecasting of infectious disease dynamcis☆16Updated this week
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 10 months ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆18Updated this week
- ☆17Updated 4 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆18Updated last year
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- Infectious disease model library and utilities☆15Updated 2 years ago
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆9Updated 3 months ago
- Naomi model for subnational HIV estimation☆9Updated 3 weeks ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated last month
- CRAN Task View: Epidemiology☆22Updated this week
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆19Updated 3 weeks ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- Repository to the R package nowcaster, nowcasting with INLA☆19Updated 2 weeks ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆34Updated 2 weeks ago
- Create Contact Matrices from Population Data☆19Updated 3 weeks ago
- Flexible Markov chain monte carlo via reparameterization☆12Updated 8 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆16Updated 10 months ago
- ☆41Updated last week
- Tools to facilitate the use of computational notebooks.☆36Updated 7 months ago