SlicerMorph / S_2019Links
Lectures, labs and all documents associated with 3D Morphometrics workshop at FHL (Summer 2019)
☆14Updated 5 years ago
Alternatives and similar repositories for S_2019
Users that are interested in S_2019 are comparing it to the libraries listed below
Sorting:
- Generate markdown notebooks from ImageJ Macro☆25Updated 4 years ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- Script that registers Histology slices to volumetric image data☆11Updated last year
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated 9 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 3 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.☆19Updated 3 months ago
- Easily read and write ome-tiff images in python☆27Updated last year
- Microsopic Image Analyzer (MIA)☆28Updated last year
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated last week
- ilastik plugin for napari☆14Updated last year
- ☆20Updated 2 weeks ago
- A napari plugin for itk-elastix☆38Updated last year
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 7 months ago
- Visualizing feature measurements on label images in napari☆10Updated 11 months ago
- MultiModal Big Image Data Sharing and Exploration☆16Updated 2 years ago
- ☆13Updated 5 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 2 weeks ago
- ☆13Updated 5 years ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆74Updated 2 months ago
- ☆22Updated 4 years ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 8 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- python tools for BigDataViewer☆22Updated 6 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 3 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆16Updated 3 months ago