omopcept : an R package to access OMOP conCEPTs (no cons!) and flexible tidyverse compatible R functions for querying and visualising.
☆16Jul 1, 2025Updated last year
Alternatives and similar repositories for omopcept
Users that are interested in omopcept are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Aug 20, 2026Updated last week
- Identifying relevant concepts from the OMOP CDM vocabularies☆18Aug 1, 2026Updated 3 weeks ago
- SQLAlchemy models for OHDSI OMOP Common Data Model☆13Updated this week
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆66Aug 17, 2026Updated 2 weeks ago
- Tidy R programming with the OMOP common data model☆21Jan 4, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tool to identify concept in the OMOP Genomic vocabulary from VCF and other files as well as HGVS notations☆15May 6, 2024Updated 2 years ago
- An ETL pipeline to transform your EMP data to OMOP.☆18Oct 15, 2025Updated 10 months ago
- ☆16Updated this week
- Create simple draw.io documents from R☆16Apr 22, 2020Updated 6 years ago
- Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.☆91May 6, 2026Updated 3 months ago
- DARE UK Sprint Project: Trusted Research Environment and Enclave for Hosting Open Original Science Exploration☆13Sep 2, 2024Updated last year
- Synthetic data for SQL databases☆12Jan 30, 2026Updated 7 months ago
- A software toolkit for the interconversion of standard data models for phenotypic data☆17Updated this week
- Snow Owl Terminology Server. This version is no longer maintained. Please use the upstream version or the alternate Snowstorm Terminology…☆11Feb 11, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Basic entity linker for the SNOMED EL Challenge☆15Jan 22, 2024Updated 2 years ago
- Model Context Protocol (MCP) server for mapping clinical terminology to Observational Medical Outcomes Partnership (OMOP) concepts using …☆40May 11, 2026Updated 3 months ago
- A repository of all code and resources of my published blog articles.☆37Dec 21, 2025Updated 8 months ago
- Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.☆270Updated this week
- R package to streamline use of the AllofUs researcher workbench☆19Aug 10, 2026Updated 2 weeks ago
- ☆29Feb 13, 2026Updated 6 months ago
- Data2Evidence is an end-to-end solution for management and analysis of OMOP data - https://data2evidence.org☆42Updated this week
- A package supporting the conversion from Synthea CSV to OMOP CDM☆130Mar 23, 2026Updated 5 months ago
- An Introduction to Transparent Machine Learning☆16Feb 6, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- List of medical abbreviations and their meanings☆52Aug 28, 2025Updated last year
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆43Nov 10, 2023Updated 2 years ago
- SATRE-Compliant TRE implementation on Kubernetes☆16Jul 7, 2026Updated last month
- Code for the paper "Rule induction for global explanation of trained models"☆22Jul 25, 2024Updated 2 years ago
- A vocabulary about the processes, entities, and agents involved in the curation of semantic mappings☆17Jun 10, 2026Updated 2 months ago
- An R package for performing various cohort diagnostics.☆53Updated this week
- ☆12Mar 15, 2024Updated 2 years ago
- Webinar | Visualización de datos con ChartJS | Materiales☆16May 4, 2020Updated 6 years ago
- Python implementation of Association Rule Mining☆11Apr 26, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A python module for redaction of personally identifiable information (PII) in clinical free-text. It builds on Presidio and is extremely …☆19Nov 13, 2025Updated 9 months ago
- A web application to find patients, build cohorts and visualize health records☆55Updated this week
- Helm charts for the GOV.UK website and publishing platform (content management system). Cluster turnup automation is in https://github.co…☆25Updated this week
- Based on assafelovic/gpt-researcher - Modified to support local Ollama models☆16May 15, 2024Updated 2 years ago
- Semantic search engine for OHDSI vocabulary☆20Updated this week
- lavaan.shiny: Latent Variable Analysis with Shiny☆11Jun 24, 2016Updated 10 years ago
- A high-level language that allows researchers to unambiguously define their research algorithms.☆18Updated this week