Tools to add restraints to FEP runs. Includes a workflow to determine reference structures and restraint widths from plain MD simulations.
☆13Mar 12, 2026Updated 5 months ago
Alternatives and similar repositories for fep-restraints
Users that are interested in fep-restraints are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26Aug 1, 2023Updated 3 years ago
- Temperature generator for Replica Exchange MD simulations☆30Dec 14, 2022Updated 3 years ago
- A collection of tools that generate and analyse side-chain rotamer libraries☆10Updated this week
- This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.☆66Dec 17, 2025Updated 8 months ago
- An open library to work with pharmacophores.☆52Jul 6, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- This module includes functions that can be used to simulate mechanochemical phenomena.☆11Nov 16, 2021Updated 4 years ago
- Conversion of coarsegrain to atomistic (complete rewrite of the original CG2AT)☆38Jul 17, 2024Updated 2 years ago
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆34Jun 3, 2025Updated last year
- RESP with inter- and intra-molecular constraints in Psi4.☆32May 26, 2023Updated 3 years ago
- Helper function for Markov State Models☆11Jun 25, 2024Updated 2 years ago
- Open Source, Automated free binding free energy calculation between protein and small molecule. An all-in-one workflow, free energy pertu…☆59Apr 21, 2025Updated last year
- PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.☆153Feb 12, 2025Updated last year
- phonetic similarity algorithms☆13Jun 19, 2018Updated 8 years ago
- Providing high-quality translations for docx while maintaining document formattin☆11Dec 16, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This script is designed for evaluating the binding affinity between a protein target and a small molecule, by calculating the binding fre…☆15May 1, 2023Updated 3 years ago