Alternatives and similar repositories for metagene-pretrain

Users that are interested in metagene-pretrain are comparing it to the libraries listed below

• Future-House / BixBench
  Benchmark for LLM-based Agents in Computational Biology
  ☆47Updated last month
• kyegomez / Pairformer
  Implementation of the Pairformer model used in AlphaFold 3
  ☆14Updated last week
• LiibanMo / scikit-jax
  Your favourite classical machine learning algos on the GPU/TPU
  ☆20Updated 7 months ago
• michaelhla / pro-1
  reasoning model trained using GRPO towards rosetta REF2015 for protein stability
  ☆86Updated 2 weeks ago
• Future-House / data-analysis-crow
  An aviary-based data science agent based on jupyter notebooks
  ☆34Updated last month
• Future-House / ldp
  Framework enabling modular interchange of language agents, environments, and optimizers
  ☆101Updated this week
• domluna / pubmedFastRAG
  ☆29Updated 6 months ago
• NousResearch / StripedHyenaTrainer
  ☆61Updated last year
• Future-House / aviary
  A language agent gym with challenging scientific tasks
  ☆198Updated this week
• Zymrael / savanna
  Pretraining infrastructure for multi-hybrid AI model architectures
  ☆180Updated 3 weeks ago
• LiteFold / litefold
  Making folding experiments more accessible .
  ☆52Updated 3 weeks ago
• ElanaPearl / InterPLM
  Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders
  ☆188Updated 6 months ago
• ArmelRandy / tree-of-problems
  [EMNLP 2024] Tree of Problems: Improving structured problem solving with compositionality
  ☆19Updated 5 months ago
• gersteinlab / BioCoder
  BioCoder: A Benchmark for Bioinformatics Code Generation with Large Language Models https://arxiv.org/abs/2308.16458
  ☆45Updated last week
• KempnerInstitute / traveling-waves-integrate
  Repository to create traveling waves integrate special information through time
  ☆53Updated this week
• snap-stanford / POPPER
  Automated Hypothesis Testing with Agentic Sequential Falsifications
  ☆216Updated 2 months ago
• ogchen / nanofold
  A nano protein structure prediction model based on DeepMind's AlphaFold paper
  ☆30Updated last year
• joey00072 / Attention-as-graph
  alternative way to calculating self attention
  ☆18Updated last year
• SebastianBodza / EnsembleForecasting
  Using multiple LLMs for ensemble Forecasting
  ☆16Updated last year
• lucidrains / flash-genomics-model
  My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…
  ☆53Updated 2 years ago
• njwfish / DistributionEmbeddings
  ☆26Updated 2 weeks ago
• idiap / sigma-gpt
  σ-GPT: A New Approach to Autoregressive Models
  ☆67Updated 11 months ago
• meetdavidwan / clamr
  CLaMR: Contextualized Late-Interaction for Multimodal Content Retrieval
  ☆18Updated last month
• etowahadams / interprot
  ☆115Updated 2 months ago
• vandijklab / Intelligence_at_the_edge_of_chaos
  ☆57Updated 5 months ago
• apoorvkh / academic-pretraining
  $100K or 100 Days: Trade-offs when Pre-Training with Academic Resources
  ☆143Updated 2 months ago
• lucidrains / mind-evolution
  Implementation of Mind Evolution, Evolving Deeper LLM Thinking, from Deepmind
  ☆56Updated 2 months ago
• xjdr-alt / muzero_sketch
  ☆38Updated last year
• SakanaAI / ab-mcts-arc2
  ☆91Updated last month
• opallab / positional_attention
  Source code for the paper "Positional Attention: Expressivity and Learnability of Algorithmic Computation"
  ☆14Updated 2 months ago