klsfct / DLforGenomics
Review Paper: Deep Learning for Genomics: A Concise Overview
☆13Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for DLforGenomics
- CNN architecture for predicting DNA binding sites for Transcription Factors☆48Updated 5 years ago
- ☆23Updated 3 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆40Updated last year
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆29Updated 3 years ago
- Rheumatoid Arthritis project. single cell RNA sequencing data.☆14Updated 3 years ago
- ☆16Updated 6 years ago
- ☆19Updated last year
- 天津医科大学，生物医学工程与技术学院，《生物信息学》课程资料☆35Updated last year
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆25Updated 7 years ago
- ☆16Updated 2 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆16Updated 3 years ago
- covolutional neural network based coexpression analysis☆74Updated 4 years ago
- Deep learning for modeling gene regulatory network☆22Updated 3 years ago
- Deep neural networks for predicting CpG methylation☆37Updated 7 years ago
- ☆10Updated 4 years ago
- "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,☆20Updated 4 years ago
- ☆34Updated 2 years ago
- This is a python package for genomics study with a GCN framework.☆39Updated 6 months ago
- Modelling RBP binding preferences to predict RPB binding sites☆11Updated last year
- ☆45Updated 3 years ago
- Deep learning based imputation of RNA secondary structure profile.☆13Updated 2 years ago
- Knowledge-primed neural networks☆34Updated last year
- Code for reproducing the Sei manuscript results☆15Updated 2 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆19Updated 5 years ago
- A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions☆25Updated last year
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆15Updated last year