Source code for "A Deep-learning System Bridging Molecule Structure and Biomedical Text with Comprehension Comparable to Human Professionals"
☆90Sep 6, 2023Updated 2 years ago
Alternatives and similar repositories for KV-PLM
Users that are interested in KV-PLM are comparing it to the libraries listed below
Sorting:
- ☆24Oct 11, 2022Updated 3 years ago
- Part of official implementation of "Natural language-informed learning of molecule graphs"☆18Jul 17, 2023Updated 2 years ago
- Associated Repository for "Translation between Molecules and Natural Language"☆192Sep 15, 2023Updated 2 years ago
- The PyTorch implementation of MoMu, described in "Natural Language-informed Modeling of Molecule Graphs".☆29Jul 17, 2023Updated 2 years ago
- Repository for Text2Mol: Cross-Modal Molecular Retrieval with Natural Language Queries☆49Mar 18, 2025Updated 11 months ago
- A Multi-modal Large Language Model for Molecular Science with Graph, Image, and Text☆36Oct 22, 2025Updated 4 months ago
- ☆23Sep 27, 2024Updated last year
- The code for GIMLET: A Unified Graph-Text Model for Instruction-Based Molecule Zero-Shot Learning☆66Feb 22, 2024Updated 2 years ago
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆123Sep 14, 2024Updated last year
- [ACL 2024] ReactXT: Understanding Molecular “Reaction-ship” via Reaction-Contextualized Molecule-Text Pretraining. by Zhiyuan Liu*, Yaoru…☆27Sep 3, 2024Updated last year
- Large Language Models in Molecular Embeddings☆12May 1, 2024Updated last year
- Official code repo for the paper "ChemToolAgent: The Impact of Tools on Language Agents for Chemistry Problem Solving" (previously "Tooli…☆18Jun 7, 2025Updated 8 months ago
- ☆15Nov 4, 2024Updated last year
- ☆14Mar 2, 2023Updated 3 years ago
- Code for "Unifying Molecular and Textual Representations via Multi-task Language Modelling" @ ICML 2023☆46Sep 9, 2024Updated last year
- Unified 2D and 3D Pre-Training of Molecular Representations☆30Jun 30, 2022Updated 3 years ago
- Pre-training Molecular Graph Representation with 3D Geometry, ICLR'22 (https://openreview.net/forum?id=xQUe1pOKPam)☆210Sep 20, 2022Updated 3 years ago
- Implementation for the paper MoCL: Contrastive Learning on Molecular Graph with multi-level Domain Knowledge☆41Sep 7, 2023Updated 2 years ago
- LLM for Drug Editing, ICLR 2024☆157May 28, 2024Updated last year
- A Unified Language Model to Integrate Biomedical Text with 2D and 3D Molecular Representations https://academic.oup.com/bioinformatics/ar…☆25Jul 19, 2024Updated last year
- Repo of pharmacophoric constrained heterogeneous-graph-transformer☆17Mar 30, 2023Updated 2 years ago
- This is a Pytorch implementation of the paper: Self-Supervised Graph Transformer on Large-Scale Molecular Data☆384Feb 25, 2026Updated last week
- Implementation of Using Drug Descriptions and Molecular Structures for Drug-Drug Interaction Extraction from Literature☆40Mar 3, 2021Updated 5 years ago
- Multi-modal Molecule Structure-text Model for Text-based Editing and Retrieval, Nat Mach Intell 2023 (https://www.nature.com/articles/s42…☆251Jun 27, 2025Updated 8 months ago
- [ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models☆292Oct 28, 2024Updated last year
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆151Mar 10, 2025Updated 11 months ago
- ☆257May 17, 2024Updated last year
- ☆171Feb 28, 2022Updated 4 years ago
- The official implementation of dual-view molecule pre-training.☆43Nov 22, 2021Updated 4 years ago
- SciFive: a text-text transformer model for biomedical literature☆98Jun 2, 2024Updated last year
- ☆21Mar 27, 2021Updated 4 years ago
- Code for the paper Enhancing Activity Prediction Models in Drug Discovery with the Ability to Understand Human Language☆109Updated this week
- Codebase to accompany the paper A Look Inside the Black Box: Using Graph-Theoretical Descriptors to Interpret a Continuous-Filter Convolu…☆12May 26, 2021Updated 4 years ago
- ☆11Jan 3, 2024Updated 2 years ago
- ☆14Aug 5, 2022Updated 3 years ago
- A LLM-based Agent Framework for Drug Discovery☆21Jan 11, 2026Updated last month
- BigSMILES☆10Jun 16, 2024Updated last year
- Ratioanle-aware Graph Contrastive Learning codebase☆44Jun 15, 2023Updated 2 years ago
- Repository for AAAI 2024 paper "MolTailor: Tailoring Chemical Molecular Representation to Specific Tasks via Text Prompts"☆23Apr 20, 2024Updated last year