dalgu90 / icd-coding-benchmark
Automatic ICD coding benchmark based on the MIMIC dataset
☆35Updated last year
Alternatives and similar repositories for icd-coding-benchmark:
Users that are interested in icd-coding-benchmark are comparing it to the libraries listed below
- My heuristic script for sentence tokenization of mimic notes☆8Updated 7 years ago
- Code repository for BEEP (Biomedical Evidence Enhanced Predictions) clinical outcome prediction system☆26Updated last year
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago
- auto icd coding with prompt☆49Updated 11 months ago
- A Label Attention Model for ICD Coding from Clinical Text☆69Updated 2 years ago
- ☆29Updated 3 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated last month
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 5 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆61Updated 2 years ago
- ☆22Updated 3 years ago
- ☆59Updated last year
- ☆36Updated last year
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆28Updated last year
- UniHPF : Universal Healthcare Predictive Framework with Zero Domain Knowledge☆13Updated last year
- BioELECTRA☆50Updated 3 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 10 months ago
- Context-Sensitive Misspelling Correction of Clinical Text via Conditional Independence, CHIL 2022☆17Updated last year
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆52Updated 2 years ago
- Implementation of the BLUE benchmark with Transformers.☆20Updated last year
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆93Updated 8 months ago
- ☆18Updated 2 years ago
- Dataset for medical question summarization introduced in the ACL 2019 paper "On the Summarization of Consumer Health Questions" (A. Ben A…☆30Updated 2 years ago
- A python package for removing duplicate text in clinical notes or other documents☆36Updated 4 years ago
- ☆98Updated 3 years ago
- Code for the emrQA question answering dataset☆148Updated 3 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆62Updated 3 years ago
- DescEmb - Unifying Heterogenous Electronic Health Records Systems via Text-Based Code Embedding☆21Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation☆48Updated 3 years ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year