hughplay / DeepCodebaseLinks
A template for deep learning projects.
☆15Updated 2 months ago
Alternatives and similar repositories for DeepCodebase
Users that are interested in DeepCodebase are comparing it to the libraries listed below
Sorting:
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆113Updated 3 years ago
- Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1☆37Updated 3 years ago
- ☆35Updated 2 months ago
- Official Implementation of "C5T5: Controllable Generation of Organic Molecules with Transformers"☆24Updated 3 years ago
- Protein Language Model☆118Updated last year
- Retrieved Sequence Augmentation for Protein Representation Learning☆53Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 2 years ago
- Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pyt…☆74Updated 4 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆97Updated 2 years ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆92Updated 2 years ago
- Residue Level Alignment☆18Updated 7 months ago
- ☆20Updated 4 years ago
- Learning to Split for Automatic Bias Detection☆48Updated 2 years ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated 9 months ago
- Code for "Learning Harmonic Molecular Representations on Riemannian Manifold", ICLR, 2023☆10Updated 2 years ago
- Energy-based models for atomic-resolution protein conformations☆98Updated 3 years ago
- Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, …☆35Updated 3 years ago
- ☆42Updated 2 years ago
- Code for 'On Pre-trained Language Models For Antibody'☆33Updated 2 years ago
- Source code for "A Deep-learning System Bridging Molecule Structure and Biomedical Text with Comprehension Comparable to Human Profession…☆89Updated last year
- Research repo for AI aided drug discovery, de novo drug development and related topics☆36Updated 3 years ago
- Code for paper 'Accelerating Antimicrobial Peptide Discovery with Latent Sequence-Structure Model'☆10Updated last year
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆114Updated 10 months ago
- ☆34Updated 4 years ago
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆149Updated 4 months ago
- Associated Repository for "Translation between Molecules and Natural Language"☆178Updated last year
- A new retrieval-based framework for controllable molecule generation.☆49Updated 2 years ago
- Implementation of ProteinBERT in Pytorch☆161Updated 3 years ago
- Code for "Biological Sequence Design with GFlowNets", 2022☆73Updated 2 years ago
- Must-read papers on NLP for science.☆58Updated 2 years ago